View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_6 (Length: 538)
Name: NF18927_low_6
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Original strand, 45917387 - 45917897
Alignment:
| Q |
11 |
catcatcattttccgaagaatgataaattaccaatggcaatgtttttgttaggtgttctgcagattcagacaattcctgaacaaatacccatttgtcaat |
110 |
Q |
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| T |
45917387 |
catcatcattttccgaagaatgataaattaccaatggcagtgtttttgttaggtgttctgcagattcagacaattcctgaacaaatacccatttgtcaat |
45917486 |
T |
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| Q |
111 |
accagagaaaagatgtctgaacccccaaattgaattaaaagaataaagaaaaagaagaacaaattaactacaactacctcatcaccagggtttgatgcat |
210 |
Q |
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| T |
45917487 |
accagagaaaagatgtctgaacccccaaattgaattaaaagaataaagaaaaagaagaacaaattaactacaactacctcatcaccagggtttgatgcat |
45917586 |
T |
|
| Q |
211 |
gatcattcaaaacttcagcaccaacagtcttggaaggttcttcagaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagt |
310 |
Q |
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| T |
45917587 |
gatcattcaaaacttcagcaccaacagtcttggaaggttcttcagaaataccctgaacacaccat-aaagttttatgcaaatagaactacaattgcaagt |
45917685 |
T |
|
| Q |
311 |
ctaagaatgaatctgcaatatttgaaagagttttacttgttcattttcaatgacagagaattccccttcaagaacagttggcttgacatcaacaggaggg |
410 |
Q |
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| T |
45917686 |
ctaagaatgaatctgcaatatttgaaagagttttacttgttcattttcaatgacagagaattccccttcaagaacagttggcttgacatcaacaggaggg |
45917785 |
T |
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| Q |
411 |
tcctgcaaatatcattcaagttgatagggtattttaggactggtgtaattaatttgataaaagaatttgagccacaaaggtaaggctgttaaaaaataaa |
510 |
Q |
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| T |
45917786 |
tcctgcaaatatcattcaagttgatagggtattttaggactggtgtaattaatttgataaaagaatttgagccacaaaggtaaggctgttaaaaaataaa |
45917885 |
T |
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| Q |
511 |
ctggtttgtttt |
522 |
Q |
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|||||||||||| |
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| T |
45917886 |
ctggtttgtttt |
45917897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 386
Target Start/End: Complemental strand, 23613825 - 23613681
Alignment:
| Q |
240 |
ttggaaggttcttcagaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagtctaagaatgaatctgcaatatttgaaaga |
339 |
Q |
| |
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|||||||| ||||||||||||||||| ||| ||||||||||||||||| || |||| | ||||||| | | || ||||| |||||||| ||||||| |
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| T |
23613825 |
ttggaaggatcttcagaaataccctggacagaccataaaagttttatgtgaacggaacaataattgcagattttagcatgaa--tgcaatatgtgaaaga |
23613728 |
T |
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| Q |
340 |
gttttacttgttcattttcaatgacagagaattccccttcaagaaca |
386 |
Q |
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| T |
23613727 |
gttttacttgttcattttggatgacaggcaattctccatcaagaaca |
23613681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 23614494 - 23614368
Alignment:
| Q |
240 |
ttggaaggttcttcagaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagtctaagaatgaatctgcaatatttgaaaga |
339 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| ||| || || ||| | |||| |||||| |
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| T |
23614494 |
ttggaaggatcttcagaaataccctggacacaccataaaaggtttatgcaaacggaacaataattgcagatcttagcataaataagtaataggtgaaagc |
23614395 |
T |
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| Q |
340 |
gttttacttgttcattttcaatgacag |
366 |
Q |
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| T |
23614394 |
gttttacatgttcattttggatgacag |
23614368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 386
Target Start/End: Complemental strand, 23611297 - 23611165
Alignment:
| Q |
254 |
agaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagtctaagaatgaatctgcaatatttgaaagagttttacttgttca |
353 |
Q |
| |
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| T |
23611297 |
agaaataccctgagcacatcataaaatttttaagcaaatggaacaataattgcagatttaaacatgaattagcataatgtgaaagagttttacttgttca |
23611198 |
T |
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| Q |
354 |
ttttcaatgacagagaattccccttcaagaaca |
386 |
Q |
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| T |
23611197 |
ttttggatggcaggcaattctccttcaacaaca |
23611165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 23614825 - 23614715
Alignment:
| Q |
241 |
tggaaggttcttcagaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagtctaagaatgaatctgcaatatttgaaagag |
340 |
Q |
| |
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||||||| ||||||||||||||||| ||||| |||||||||||||| || |||| | ||||||| ||| || || ||| ||||||| |||||| | |
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| T |
23614825 |
tggaaggatcttcagaaataccctggacacaaaataaaagttttatgtgaacggaacaataattgcatatcttagcatcaattagcaatatgtgaaagtg |
23614726 |
T |
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| Q |
341 |
ttttacttgtt |
351 |
Q |
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| T |
23614725 |
ttttacttgtt |
23614715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 23612599 - 23612471
Alignment:
| Q |
252 |
tcagaaataccctgaacacaccataaaagttttatgcaaatagaactacaattgcaagtctaagaatgaatctgcaatatttgaaagagttttacttgtt |
351 |
Q |
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||||| ||| |||||||||| ||||||| ||||||||||| |||| | || |||| |||||| |||||| |||| | |||| ||||||||| |||| |
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| T |
23612599 |
tcagagataacctgaacacaacataaaaaatttatgcaaatggaacaataactgcaggtctaatcatgaattagcaacaagtgaa-gagttttacctgtt |
23612501 |
T |
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| Q |
352 |
cattttcaatgacagagaattccccttcaa |
381 |
Q |
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|||||| |||||||| ||||| ||||||| |
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| T |
23612500 |
cattttggatgacagacaattctccttcaa |
23612471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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