View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18927_low_9 (Length: 428)
Name: NF18927_low_9
Description: NF18927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18927_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 38883738 - 38883343
Alignment:
| Q |
14 |
acatcatcttgaagaattgtaaaatgagacataatcctatcagactcaccaaccattatagcggcaactttgcctccgcctataggagctatgagcattt |
113 |
Q |
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| T |
38883738 |
acatcatcttgaagaattgtaaaatgagacataatcctatcagactcaccaaccattatagcggcaactttgcctccgcctataggagctatgagcattt |
38883639 |
T |
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| Q |
114 |
tatagagctccaaaaggaatggaggaaacaaagacctcaaaattcgtacctgtaacaagacataagggctaacaaacttgctctggacaaatgaccattc |
213 |
Q |
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| T |
38883638 |
tatagagctccaaaaggaatggaggaaacaaagacctcaaaattcgtacctgtaacaagacataagggctaacaaacttgctctggacaaatgaccattc |
38883539 |
T |
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| Q |
214 |
aaaatttagaacaatcatataaggtgaattactatatcacaaatgttatgacttacgttgcagtgatgtgaaaagttgaaacacgtacatgtatgaccag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38883538 |
aaaatttagaacaatcatataaggtgaattactatatcacaaatgttatgacttactttgcagtgatgtgaaaagttgaaacacgtacatgtatgaccag |
38883439 |
T |
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| Q |
314 |
aataagtaacattgtattacggtatgtctggaattgtggtatagagttgaatcaatggagtggattggaataaaacggaatagaatggaatgaagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38883438 |
aataagtaacattgtattacggtatgtctggaattgtggtatagagttgaatcaatggagtggattggaataaaacggaatagaattgaatgaagt |
38883343 |
T |
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