View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_1 (Length: 622)
Name: NF18928_high_1
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 28684466 - 28683932
Alignment:
| Q |
1 |
tacacaaataagttttctctttcgatataannnnnnn-atacacacgagcctttgatcacatgttttacaacttggatcgatccattgttagtgaataaa |
99 |
Q |
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| T |
28684466 |
tacacaaataaattttctctttcgatataattttttctatacgcacgagcctttgatcacatgttttacaacttggatcgatccattgttagtgaataaa |
28684367 |
T |
|
| Q |
100 |
tttgtatatcttatagtatatgtgtgtaaattttcacataaattatttaaaaatatccaatatatattgaatagtcaaattaccagctcaacttgtgtga |
199 |
Q |
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| T |
28684366 |
tttgtatatcttatagtatatgtgtataaattttcacataaattatttaaaaatatccaatatatattgaatagtcaaattaccagctcaacttgtgtga |
28684267 |
T |
|
| Q |
200 |
tttgtcccttgccagcccaactttttaggggagaaacaaattacgatttagcaaaattcacaagtggctcctgtcaacaacaaaaatcacaagtagaaga |
299 |
Q |
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| T |
28684266 |
tttgtcccttgccagcccaactttttaggggagaaacaaattacgatttagcaaaattcacaagtggctcctgtcaacaacaaaaatcacaagtagaaga |
28684167 |
T |
|
| Q |
300 |
ttgccataatatcaatctttttcaatatcaacatgtgtttcatacaaggaaacaacccatatgtaccatatatcctgccccaaaaagagtcctttgtacc |
399 |
Q |
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| T |
28684166 |
ttgccataatatcaatctttttcaatatcaacatgtgtttcatacaaggaaacaacccatatgtaccatatatcttgccccaaaaagagtcctttgtacc |
28684067 |
T |
|
| Q |
400 |
aagttaatcaatttgaacttttcaagtactaaacaaacatcaaatctaggtgaaacagaaaatacatgaggtgaagtggtaaacattaaataaagcatat |
499 |
Q |
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| T |
28684066 |
aagttaatcaatttgaacttttgaagtactaaacaaacatcaaatctaggtgaaacagaaaatacatgaggtgaaatggtaaacattaaataaagcatat |
28683967 |
T |
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| Q |
500 |
gaaaaagttaaataagtctccaattcatcactgtt |
534 |
Q |
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| T |
28683966 |
gaaaaagttaaataagtctccaattcatcactgtt |
28683932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 529 - 604
Target Start/End: Complemental strand, 28683911 - 28683836
Alignment:
| Q |
529 |
actgttcagctttttggttatgtgctgaatattttctaacacaatcaatttattcgcatgaaaaatagaacacact |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
28683911 |
actgttcagctttttggttatgtgctgaatattttctaacacaatcaatttattcgcatgaaaaataaaatacact |
28683836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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