View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18928_high_18 (Length: 345)

Name: NF18928_high_18
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18928_high_18
NF18928_high_18
[»] chr3 (7 HSPs)
chr3 (13-318)||(22319044-22319349)
chr3 (236-326)||(14984438-14984528)
chr3 (236-326)||(30843788-30843878)
chr3 (235-330)||(22235215-22235310)
chr3 (236-326)||(43838807-43838897)
chr3 (258-331)||(36080549-36080622)
chr3 (244-296)||(14984664-14984716)
[»] chr6 (7 HSPs)
chr6 (236-326)||(10219569-10219659)
chr6 (236-326)||(33806682-33806772)
chr6 (218-324)||(3859842-3859947)
chr6 (251-326)||(19264721-19264795)
chr6 (251-326)||(515991-516066)
chr6 (231-326)||(4964267-4964362)
chr6 (236-327)||(10067705-10067796)
[»] chr1 (9 HSPs)
chr1 (251-324)||(30050593-30050666)
chr1 (231-290)||(5529849-5529908)
chr1 (214-305)||(50457131-50457220)
chr1 (235-319)||(51660460-51660544)
chr1 (236-315)||(27463891-27463970)
chr1 (218-247)||(39672429-39672458)
chr1 (186-243)||(40243150-40243207)
chr1 (192-241)||(45058903-45058952)
chr1 (236-320)||(34826835-34826918)
[»] chr5 (7 HSPs)
chr5 (251-331)||(37149987-37150067)
chr5 (251-324)||(6217642-6217715)
chr5 (251-320)||(22579503-22579572)
chr5 (250-324)||(35293808-35293882)
chr5 (238-306)||(32270632-32270700)
chr5 (253-317)||(37149852-37149916)
chr5 (251-291)||(39194867-39194907)
[»] chr7 (11 HSPs)
chr7 (200-267)||(40355311-40355378)
chr7 (251-331)||(12849717-12849797)
chr7 (236-320)||(39608353-39608437)
chr7 (231-330)||(5362272-5362371)
chr7 (236-327)||(46720001-46720092)
chr7 (186-247)||(27225823-27225884)
chr7 (250-325)||(23457813-23457888)
chr7 (237-291)||(14669300-14669354)
chr7 (253-327)||(20889419-20889493)
chr7 (177-247)||(27233760-27233830)
chr7 (251-319)||(32996501-32996569)
[»] chr4 (14 HSPs)
chr4 (236-318)||(11840018-11840100)
chr4 (251-327)||(17381549-17381625)
chr4 (236-323)||(11358484-11358570)
chr4 (231-326)||(11839800-11839895)
chr4 (192-266)||(42424307-42424381)
chr4 (251-326)||(12034414-12034489)
chr4 (251-319)||(46804794-46804862)
chr4 (191-261)||(41368979-41369049)
chr4 (236-297)||(8170760-8170821)
chr4 (236-297)||(35075822-35075883)
chr4 (251-307)||(8755963-8756019)
chr4 (251-327)||(17381315-17381391)
chr4 (251-319)||(31903484-31903552)
chr4 (249-313)||(33860207-33860271)
[»] chr8 (6 HSPs)
chr8 (251-319)||(3714766-3714834)
chr8 (251-317)||(41303150-41303216)
chr8 (257-326)||(21215930-21215999)
chr8 (244-320)||(21601945-21602021)
chr8 (252-327)||(17488193-17488268)
chr8 (236-306)||(6393834-6393904)
[»] chr2 (7 HSPs)
chr2 (232-306)||(37256466-37256540)
chr2 (253-316)||(19206503-19206566)
chr2 (236-327)||(20167576-20167667)
chr2 (251-326)||(40124296-40124371)
chr2 (235-308)||(12676431-12676504)
chr2 (231-320)||(15301566-15301654)
chr2 (251-320)||(34883936-34884005)
[»] scaffold0003 (1 HSPs)
scaffold0003 (236-320)||(109256-109339)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 22319349 - 22319044
Alignment:
Q  13 aaggtaaatatgagataaccctaataagggggattagactgtaaagttaaagaggataaagaataagaacaataaaaatcacttggttattaagcatgag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22319349 aaggtaaatatgagataaccctaataagggggattagactgtaaagttaaagaggataaagaataagaacaataaaaatcacttggatattaagcatgag 22319250  T
Q  113 agatatttaaactcaacaaagtaagatgacaatcatttctctaacttccatacattcatccactcattgaccaatcacgcttcaaccctccaaaagctcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22319249 agatatttaaactcaacaaagtaagatgacaatcatttctctaacttccatacattcatccactcattgaccaatcacgcttcaaccctccaaaagctcc 22319150  T
Q  213 aaggtcatggcgttaaaggaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaaggga 312  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  22319149 aaggtcatggcgttaaaggaagcattttaacgtcaggaattatttttactaacaaagtgcataatcaatgactattttgtaatttcgctacattaaggga 22319050  T
Q  313 ctattg 318  Q
    ||||||    
T  22319049 ctattg 22319044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 14984528 - 14984438
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||| || ||||||| ||||||| || ||| ||||||||||||| |||||    
T  14984528 attttaatgtcaggaactattttgactaacgaagtgcacaatcagggagtattttgaaatttcgatatattgagggactattgtgactact 14984438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 30843788 - 30843878
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||||| ||||||| |||||||||| |||||||||||| |||||| || ||||||| ||||| | ||||||||| |||||||||| |||||    
T  30843788 attttagcgtcagggactattttgattaacaaagtgcacaatcagagactattttggaattttgatacattaagagactattgtgactact 30843878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 22235310 - 22235215
Alignment:
Q  235 cattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctacttatt 330  Q
    ||||||||||| ||  ||||||||||||||| ||||| | |||||| || ||||||| |||||   |||||| | ||||||||||||||| |||||    
T  22235310 cattttaacgtgagagactattttgactaacgaagtgtacaatcagcgactattttgaaattttaatacattcaaggactattgtggctatttatt 22235215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 43838807 - 43838897
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||||||||   |||||||||||||||||| |||| ||||| ||| ||||||  ||||| | ||||||||| ||| ||| | ||||||    
T  43838807 attttaacgtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgatacattaagtgacaattatagctact 43838897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 36080622 - 36080549
Alignment:
Q  258 tgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctacttattg 331  Q
    |||||||||||||| | |||||| |||||||||| ||||| | ||||| ||  |||||||||| ||||| ||||    
T  36080622 tgactaacaaagtgaacaatcagggattattttgaaattttgatacatcaaatgactattgtgactactcattg 36080549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 14984664 - 14984716
Alignment:
Q  244 gtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatt 296  Q
    |||||| |||||||||| |||||||||||| |||||| || ||||||| ||||    
T  14984664 gtcagggactattttgattaacaaagtgcacaatcagggactattttgcaatt 14984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 10219659 - 10219569
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||  | ||||||| |||||||  |||||||||||||||||||||||||    
T  10219659 attttaacgtcagagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcgacacattaagggactattgtggctact 10219569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 33806772 - 33806682
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||||||||| ||  |||||||||||||||||||| |||||||| ||| ||||||  ||||||| |||||||| ||| ||||||| |||||    
T  33806772 attttaacgttagagactattttgactaacaaagtacataatcaatgactattttagaatttcgatacattaaaggattattgtgactact 33806682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 324
Target Start/End: Complemental strand, 3859947 - 3859842
Alignment:
Q  218 catggcgttaaaggaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactatt 317  Q
    |||||||||||||||| |||||||||||||   |||||||||||||  |||  ||| |||||| || ||||||||| |||||||| ||||| | |||||     
T  3859947 catggcgttaaaggaaacattttaacgtcaaatactattttgactattaaatggcacaatcagagactattttgtattttcgcta-attaaagaactatg 3859849  T
Q  318 gtggcta 324  Q
    |||||||    
T  3859848 gtggcta 3859842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 19264721 - 19264795
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||||||||||||||| ||||||||||||| || ||||||  ||||||| |||||| || |||||||||| |||||    
T  19264721 actattttgactaacatagtgcataatcagagactattttaaaatttcgatacatt-agagactattgtgactact 19264795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 515991 - 516066
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||| ||||||| ||||| |||  ||| ||||| |||||    
T  515991 actattttgactaacgaagtgcacaatcattgactattttggaatttcgatacatcaagttactgttgtgactact 516066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 4964267 - 4964362
Alignment:
Q  231 gaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||||||||  |||  ||||||||||||||| |||||||||||| | ||| ||||||  |||||   |||||| | |||||| ||||||||||    
T  4964267 gaagcattttaatatcaaaaactattttgactaataaagtgcataattattgactattttaaaattttaatacattgaaggactagtgtggctact 4964362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 10067705 - 10067796
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    ||||||| |||||  |||||||||| ||||||| | || |||||| || ||||||  ||||||| |||||| || ||||||||||| |||||    
T  10067705 attttaatgtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgatacattgagagactattgtggttactt 10067796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 30050593 - 30050666
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggcta 324  Q
    |||||||||||||||||| ||||||||||  || ||||||| ||||||| ||||||||||||||||| ||||||    
T  30050593 actattttgactaacaaattgcataatcatagactattttgaaatttcgatacattaagggactattttggcta 30050666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 5529849 - 5529908
Alignment:
Q  231 gaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattatttt 290  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||| || |||||||||    
T  5529849 gaagtattttaatgtcagaaactattttgactaacaaagtgcataattagggattatttt 5529908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 50457220 - 50457131
Alignment:
Q  214 aggtcatggcgttaaaggaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacat 305  Q
    |||||||||||||||||||| ||||||||| |||   |||||||||||||| | |||| | ||||| ||| |||||| ||||||||||||||    
T  50457220 aggtcatggcgttaaaggaaacattttaacatcaaatactattttgactaa-agagtgtacaatca-tgactattttataatttcgctacat 50457131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 51660544 - 51660460
Alignment:
Q  235 cattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgt 319  Q
    ||||||||| ||  |||||||||||||||||||| | || |||||| |||||||||| |||||   |||| |||| |||||||||    
T  51660544 cattttaacatcgtgaactattttgactaacaaatttcacaatcagggattattttgaaatttttatacactaagagactattgt 51660460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 27463891 - 27463970
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggacta 315  Q
    |||||||||| ||||||||||||| ||||| ||||||| || ||| || ||||||| ||||| | |||||| || |||||    
T  27463891 attttaacgttaggaactattttgtctaacgaagtgcacaaccagagactattttgaaattttgatacattgagagacta 27463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 39672458 - 39672429
Alignment:
Q  218 catggcgttaaaggaagcattttaacgtca 247  Q
    ||||||||||||||||||||||||||||||    
T  39672458 catggcgttaaaggaagcattttaacgtca 39672429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 40243207 - 40243150
Alignment:
Q  186 atcacgcttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcattttaac 243  Q
    |||| ||||||||||| |||||||||||| | |||| | ||||||||| |||||||||    
T  40243207 atcatgcttcaacccttcaaaagctccaatgccatgacattaaaggaaacattttaac 40243150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 45058903 - 45058952
Alignment:
Q  192 cttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcatttta 241  Q
    |||||||||||||| ||||| |||||||||| ||||||| || |||||||    
T  45058903 cttcaaccctccaagagctctaaggtcatggggttaaagaaaacatttta 45058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 34826918 - 34826835
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    ||||||||||||   |||||||||||||||| | |||| ||||||||| ||||||  ||||| | |||||| | |||||||||||    
T  34826918 attttaacgtcaaagactattttgactaacagaatgcacaatcagtga-tattttaaaattttgatacattgaaggactattgtg 34826835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 37149987 - 37150067
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctacttattg 331  Q
    |||||||||||||||||||||| |||| |  || ||||||| ||||| |||||||||| ||||||||||||||||| ||||    
T  37149987 actattttgactaacaaagtgcctaatgaacgactattttggaattttgctacattaaaggactattgtggctactcattg 37150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 6217642 - 6217715
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggcta 324  Q
    ||||||||||||||| |||||||||||||  || ||||||| ||||| | |||||| |||||||||||||||||    
T  6217642 actattttgactaacgaagtgcataatcatggactattttgaaattttgatacattgagggactattgtggcta 6217715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 22579503 - 22579572
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    |||||||||| |||||||||| |||||||| |||||||||  ||||| | |||||| | |||||||||||    
T  22579503 actattttgattaacaaagtgtataatcagggattattttaaaattttgatacattgatggactattgtg 22579572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 35293808 - 35293882
Alignment:
Q  250 aactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggcta 324  Q
    ||||||||||||||||| | |||||| ||||||| ||||||| ||||||| || ||| | |||  ||||||||||    
T  35293808 aactattttgactaacacaatgcatactcagtgactattttgaaatttcgatagattgaaggatcattgtggcta 35293882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 32270632 - 32270700
Alignment:
Q  238 tttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacatt 306  Q
    |||||||| ||| |||||||||||||||| |  ||| |||||  |||||||||| ||||||| ||||||    
T  32270632 tttaacgtaagggactattttgactaacatatcgcacaatcatagattattttgaaatttcgatacatt 32270700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 37149916 - 37149852
Alignment:
Q  253 tattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactatt 317  Q
    ||||||||| |||| | ||||||||||   | |||||||||||||||||||||| | ||||||||    
T  37149916 tattttgaccaacagattgcataatcacaaactattttgtaatttcgctacattgaaggactatt 37149852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 39194907 - 39194867
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttg 291  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  39194907 actattttgactaacaaagtgcacaatcaatgactattttg 39194867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 40355378 - 40355311
Alignment:
Q  200 ctccaaaagctccaaggtcatggcgttaaaggaagcattttaacgtcaggaactattttgactaacaa 267  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||||||  |||||||| ||||||||    
T  40355378 ctccaagagctccgaggtcatggcgttaaaggaaacattttaacgtcagagactattttaactaacaa 40355311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 12849717 - 12849797
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctacttattg 331  Q
    ||||||| ||||||||||||||| |||||| || ||||||||||||| | ||||||||  |||||||||| ||||| ||||    
T  12849717 actatttcgactaacaaagtgcacaatcagagactattttgtaattttgatacattaaaagactattgtgactactcattg 12849797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 39608437 - 39608353
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    ||||||| || || ||||||||| |||||| |||||||  |||| ||||||||||| ||||||| |||||| || ||||||||||    
T  39608437 attttaatgtaagtaactattttaactaacgaagtgcacgatcaatgattattttgaaatttcgatacattgagagactattgtg 39608353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 5362371 - 5362272
Alignment:
Q  231 gaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctacttatt 330  Q
    |||| |||||||  ||||| |||||||||||||||||| | || |||||   | ||||||| ||||||| |||| |||| |||| |||||||||||||||    
T  5362371 gaagtattttaatatcagggactattttgactaacaaattacacaatcatgaactattttgaaatttcgatacactaagagactgttgtggctacttatt 5362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 46720001 - 46720092
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    ||||||||||||  |||||||||||||||||||||||| |||||   |  |||||  ||||||  |||||| ||||||||||||| ||||||    
T  46720001 attttaacgtcaaaaactattttgactaacaaagtgcacaatcaaataccattttaaaatttcaatacattgagggactattgtgactactt 46720092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 27225884 - 27225823
Alignment:
Q  186 atcacgcttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcattttaacgtca 247  Q
    ||||| |||| ||||||||| |||||||||| |||| ||||||||||| ||||| |||||||    
T  27225884 atcacacttcgaccctccaagagctccaaggccatgacgttaaaggaaacatttaaacgtca 27225823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 23457813 - 23457888
Alignment:
Q  250 aactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctac 325  Q
    ||||||||||| |||||||||||| ||||| | | ||||||  ||||||| |||||| | |||||||| |||||||    
T  23457813 aactattttgattaacaaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatggctac 23457888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 14669354 - 14669300
Alignment:
Q  237 ttttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttg 291  Q
    ||||||||||| | |||||||||||||||| |||||| |||||| || |||||||    
T  14669354 ttttaacgtcaaggactattttgactaacatagtgcacaatcagagactattttg 14669300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 20889419 - 20889493
Alignment:
Q  253 tattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    |||||||||||| |||||    |||||| |||||||||| ||| | | |||||| ||||||||||||||||||||    
T  20889419 tattttgactaataaagtatgcaatcagagattattttgaaatgttgatacattgagggactattgtggctactt 20889493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 27233830 - 27233760
Alignment:
Q  177 cattgaccaatcacgcttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcattttaacgtca 247  Q
    |||| ||| ||||| |||||||||||||| |||||||||| |||| | ||||| ||| |||||||| ||||    
T  27233830 cattaacccatcacacttcaaccctccaagagctccaagggcatgactttaaaagaaacattttaaagtca 27233760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 32996501 - 32996569
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgt 319  Q
    |||||||||| |||||||||||| |||||| || ||||||  ||||| | | |||| ||||||||||||    
T  32996501 actattttgattaacaaagtgcacaatcagagactattttagaattttgatgcattgagggactattgt 32996569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 11840018 - 11840100
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattg 318  Q
    |||||||||||||| |||||||||| |||||||||||| |||||| || ||||||| ||||| | |||||| |||| ||||||    
T  11840018 attttaacgtcagggactattttgattaacaaagtgcacaatcagggactattttgaaattttgatacattgagggcctattg 11840100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 17381549 - 17381625
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    |||||||||| |||||||||||| |||||| || ||||||| ||||| | |||||| ||||||||||||| ||||||    
T  17381549 actattttgattaacaaagtgcacaatcagggactattttggaattttgatacattgagggactattgtgactactt 17381625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 11358570 - 11358484
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggct 323  Q
    |||||||||||||  ||||||||||||||| ||||||| |||||  |||||||||| ||||||| |||||| || ||| |||||||||    
T  11358570 attttaacgtcagagactattttgactaacgaagtgcacaatcatggattattttg-aatttcgatacattgagagaccattgtggct 11358484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 11839895 - 11839800
Alignment:
Q  231 gaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||| ||||||| |||| | ||||||||||||||| | ||||| |||| | || ||||||| ||||||| || ||| |||||||||||||||||||    
T  11839895 gaagtattttaatgtcaaggactattttgactaacgaggtgcacaatctgggactattttgaaatttcgatatattgagggactattgtggctact 11839800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 42424381 - 42424307
Alignment:
Q  192 cttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcattttaacgtcaggaactattttgactaaca 266  Q
    |||||||||||||||||||||||||| || | |||||||||| |||||||| ||||| ||  || ||||||||||    
T  42424381 cttcaaccctccaaaagctccaaggttatagtgttaaaggaaacattttaatgtcagaaatcatgttgactaaca 42424307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 12034489 - 12034414
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||||||||||||||||  | |||||| || ||||||| ||||| | |||||| ||||||||||||| |||||    
T  12034489 actattttgactaacaaagtatacaatcagagactattttgcaattttgatacattgagggactattgtgactact 12034414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 46804862 - 46804794
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgt 319  Q
    ||||||||||||||||||||| | |||||| || ||||||  ||||| | |||||| ||||||||||||    
T  46804862 actattttgactaacaaagtgtacaatcagagactattttaaaattttgatacattgagggactattgt 46804794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 41368979 - 41369049
Alignment:
Q  191 gcttcaaccctccaaaagctccaaggtcatggcgttaaaggaagcattttaacgtcaggaactattttgac 261  Q
    ||||||||||||||| | |||||    |||||| ||||||||||||||||||||| || ||||| ||||||    
T  41368979 gcttcaaccctccaagaactccagaaccatggcattaaaggaagcattttaacgtaagaaactactttgac 41369049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 8170821 - 8170760
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaattt 297  Q
    ||||| |||||||  ||||||||||||||||||||||| |||||  || ||||||| |||||    
T  8170821 attttgacgtcagagactattttgactaacaaagtgcacaatcaaagactattttgaaattt 8170760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 35075822 - 35075883
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaattt 297  Q
    ||||||| |||| |||||| |||||||||| ||||||| |||||   |||||||||||||||    
T  35075822 attttaatgtcatgaactagtttgactaacgaagtgcacaatcaagaattattttgtaattt 35075883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 8755963 - 8756019
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacatta 307  Q
    |||||||||| |||| ||||||||||||| ||||||||||  ||||| | |||||||    
T  8755963 actattttgattaacgaagtgcataatcaatgattattttaaaattttgttacatta 8756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 17381391 - 17381315
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    ||||||||||||||||||||| |  ||||| || | ||||| ||||| | |||||| | ||||||||||| ||||||    
T  17381391 actattttgactaacaaagtggactatcagagacttttttgaaattttgatacattgaaggactattgtgactactt 17381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 31903484 - 31903552
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgt 319  Q
    |||||||||| ||||||||||||  ||||| || ||||||| ||||| | ||| || ||||||||||||    
T  31903484 actattttgattaacaaagtgcacgatcagagactattttggaattttgatacgttgagggactattgt 31903552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 33860271 - 33860207
Alignment:
Q  249 gaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggac 313  Q
    |||||||||||||||| | |||||||||||| ||| |||| || ||||||  |||||| ||||||    
T  33860271 gaactattttgactaaaatagtgcataatcaatgactattgtgaaatttcaatacattgagggac 33860207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 3714834 - 3714766
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgt 319  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||   || ||||| ||||||||||    
T  3714834 actattttgactaacaaaatgcaaaatcagtgattattttgaaattttaatatattaaaggactattgt 3714766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 41303150 - 41303216
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactatt 317  Q
    ||||||||||||| ||||||||||||||| ||| ||||||  ||||| | |||||| ||||||||||    
T  41303150 actattttgactagcaaagtgcataatcaatgactattttaaaattttgatacattgagggactatt 41303216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 21215999 - 21215930
Alignment:
Q  257 ttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    ||||||||| ||||||| ||||| ||| ||||||| ||||||  |||||| | |||||||||||||||||    
T  21215999 ttgactaacgaagtgcacaatcaatgactattttgaaatttcaatacattgaaggactattgtggctact 21215930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 21602021 - 21601945
Alignment:
Q  244 gtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    |||||| |||| |||||||||||| ||||| |||||| || ||||||| ||||| | |||||| | |||||||||||    
T  21602021 gtcagggactactttgactaacaacgtgcacaatcagagactattttggaattttgatacattgatggactattgtg 21601945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 17488193 - 17488268
Alignment:
Q  252 ctattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    |||||||||| |||| | | || |||||  || ||||||| |||||||||||||| ||||||||||||| ||||||    
T  17488193 ctattttgaccaacataattcacaatcaaggactattttgaaatttcgctacattgagggactattgtgactactt 17488268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 6393904 - 6393834
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacatt 306  Q
    ||||||| || |||||||||||||||||| |||||||| |||||   | ||||||| ||||||| ||||||    
T  6393904 attttaatgttaggaactattttgactaataaagtgcacaatcatgaactattttgaaatttcgatacatt 6393834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 37256466 - 37256540
Alignment:
Q  232 aagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacatt 306  Q
    |||||||||||||||| |||||||||||||||||| | | |||||| |  ||||||||| |||||| | ||||||    
T  37256466 aagcattttaacgtcatgaactattttgactaacataatacataatgaaggattattttttaattttgatacatt 37256540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 19206503 - 19206566
Alignment:
Q  253 tattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactat 316  Q
    ||||||||||||||||||||||||||||  | ||||||  ||||| | |||||||| |||||||    
T  19206503 tattttgactaacaaagtgcataatcagaaactattttaaaattttgatacattaaaggactat 19206566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 20167576 - 20167667
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctactt 327  Q
    ||||||| |||||  ||||||||| ||||||||||| | |||||| || ||||||| ||||| | | |||| || |||||||||| ||||||    
T  20167576 attttaatgtcagagactattttgtctaacaaagtgtacaatcagggaatattttgcaattttgatgcattgagtgactattgtgactactt 20167667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 40124371 - 40124296
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtggctact 326  Q
    |||||||||||||||  |||||| |||||| ||  |||||  ||||||| |||||||| ||||||||||| |||||    
T  40124371 actattttgactaacggagtgcacaatcagagaccattttaaaatttcgatacattaatggactattgtgactact 40124296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 12676504 - 12676431
Alignment:
Q  235 cattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaa 308  Q
    |||||||||||||| || ||||||||||||| ||||||| |||||  || ||||||   |||||| ||||||||    
T  12676504 cattttaacgtcagaaattattttgactaactaagtgcacaatcatagactattttaacatttcgatacattaa 12676431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 15301566 - 15301654
Alignment:
Q  231 gaagcattttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    |||| ||||||| |||||  |||||||||||| | ||| |||| |||||| |||||||||| ||||||| |||||| || ||| ||||||    
T  15301566 gaagtattttaatgtcagagactattttgact-agaaaatgcacaatcagagattattttgaaatttcgatacattgagagacgattgtg 15301654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 34884005 - 34883936
Alignment:
Q  251 actattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    |||||||||||||||| |||||| ||| || || ||||||  ||||| | |||||| |||||||||||||    
T  34884005 actattttgactaacagagtgcacaattagagactattttaaaattttgatacattgagggactattgtg 34883936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 109256 - 109339
Alignment:
Q  236 attttaacgtcaggaactattttgactaacaaagtgcataatcagtgattattttgtaatttcgctacattaagggactattgtg 320  Q
    |||||||||||||  ||||||| ||||| ||||||||| | ||| ||| ||||||  ||||||| |||||  |||||||||||||    
T  109256 attttaacgtcagtgactattt-gactagcaaagtgcacattcaatgactattttaaaatttcgatacatacagggactattgtg 109339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University