View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_20 (Length: 338)
Name: NF18928_high_20
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 22323490 - 22323293
Alignment:
| Q |
16 |
atgcacttatcaaattcctttactcttaaatttttgcactccgagcaaaacttaagttcaagactcaaagccagattcaaaaggaccaaaataaagcatg |
115 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22323490 |
atgcacttatcaaattcctccacgcttaaatttttgcactccgagcaaaacataagttcaagactcaaagccagattcaaaaggaccaaaataaaccatg |
22323391 |
T |
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| Q |
116 |
atttaattccaaagaatgccaagagtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttatggtatt |
214 |
Q |
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| T |
22323390 |
att-aattccaaagaatgccaagggtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttatggtatt |
22323293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 22338549 - 22338352
Alignment:
| Q |
16 |
atgcacttatcaaattcctttactcttaaatttttgcactccgagcaaaacttaagttcaagactcaaagccagattcaaaaggaccaaaataaagcatg |
115 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22338549 |
atgcacttatcaaattcctccacgcttaaatttttgcactccgagcaaaacataagttcaagactcaaagccagattcaaaaggaccaaaataaaccatg |
22338450 |
T |
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| Q |
116 |
atttaattccaaagaatgccaagagtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttatggtatt |
214 |
Q |
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| T |
22338449 |
att-aattccaaagaatgccaagggtttaaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataaaatcttatggtatt |
22338352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 338
Target Start/End: Complemental strand, 22319435 - 22319307
Alignment:
| Q |
210 |
gtattggcttgaaaaatctctagcatctacacttgaaactcatgcacgtaaagatcnnnnnnnnttattgaggttgtaacgaagccaagggaaatatgag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
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| T |
22319435 |
gtattggcttgaaaaatctctagcatctacacttgaaactcatgcacgtaaagatcaaaagtttttattgaggttgtaacgaggccaaggtaaatatgag |
22319336 |
T |
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| Q |
310 |
ataacactaataagggggattagactgta |
338 |
Q |
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| T |
22319335 |
ataaccctaataagggggattagactgta |
22319307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 22806479 - 22806543
Alignment:
| Q |
144 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttat |
208 |
Q |
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|||||| |||||||||| ||||||| ||| |||||||| |||| ||||||||||||||||||||| |
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| T |
22806479 |
aaagttacaagaaattagcacattccaggattcaaggagcatggcaatcatgaataacatcttat |
22806543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 28813653 - 28813588
Alignment:
| Q |
144 |
aaagttgcaagaaattatcacattctaggcttcaaggaacatgacaatcatgaataacatcttatg |
209 |
Q |
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|||| |||||| ||||| ||||||||| | |||||||| ||| |||||||||||||||||||||| |
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| T |
28813653 |
aaagctgcaagcaattagcacattctaagattcaaggagtatgccaatcatgaataacatcttatg |
28813588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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