View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_29 (Length: 269)
Name: NF18928_high_29
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 63 - 269
Target Start/End: Complemental strand, 16579052 - 16578846
Alignment:
| Q |
63 |
ctattcaacatgcaacaaatttcattataatatgataattatgatctataaatacatagtcactcacataacattcactcataactcataacaacaattt |
162 |
Q |
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| T |
16579052 |
ctattcaacatgcaacaaatttcattataatatgataattatgatctataaatacatagtcactcacataacattcactcataactcataacaacaattt |
16578953 |
T |
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| Q |
163 |
ctacacaaactctnnnnnnntttggtttttcacttgcttaagaatcaacattatgggagccaacttttccaatttagaatctgttgtcgagaaatcatca |
262 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16578952 |
ctacacaaactctaaaaaaatttggtttttcacttgcttaagaatcaacattatgggagccaacttttccaatttagaatctgttgtcgagaaatcatca |
16578853 |
T |
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| Q |
263 |
cagccat |
269 |
Q |
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| T |
16578852 |
cagccat |
16578846 |
T |
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