View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_30 (Length: 266)
Name: NF18928_high_30
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 54264444 - 54264699
Alignment:
| Q |
11 |
cacagaactgaggaaaacattattactaattcttatcaggtaaaaatgaggtaaaaactctgcttgattcaatcccattggttgcacttactttacataa |
110 |
Q |
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| T |
54264444 |
cacagaactgaggaaaacattattactaattcttatcaggtaaaaatgaggtaaaaactctgcttgattcaatcccattggttgcacttactttacataa |
54264543 |
T |
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| Q |
111 |
atgatcattttatttaaaatcacgcaatttatttgagcattagtgcatattacatatgttttgatagatttnnnnnnnctaatcaatgaaaggggatctt |
210 |
Q |
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| T |
54264544 |
atgatcattttatttaaaatcacacaatttatttgagcattagtgcatattacatatgttttgatagatttaaaaaaactaatcaatgaaaggggatctt |
54264643 |
T |
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| Q |
211 |
gctcaagagataaaaagtaggacctagttttttcttttcttagagtaactagcatt |
266 |
Q |
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| T |
54264644 |
gctcaagagataaaaagtaggacctagttttttcttttcttagagtaactagcatt |
54264699 |
T |
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