View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_31 (Length: 263)
Name: NF18928_high_31
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 10342109 - 10342366
Alignment:
| Q |
1 |
caatgttacaaattctaacaaccaaaagaatttcacccttctgccttaagaatcatggcatcatcaccattcagttaatcttgtttcaaccaagcaagaa |
100 |
Q |
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| T |
10342109 |
caatgttacaaattctaacaaccaaaagaatttcacccttctgccttaagaatcatggcatcatcaccattcagttaatcttgtttcaaccaagcaagaa |
10342208 |
T |
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| Q |
101 |
atttgtcaaaagtaaacaaaaaagattctatgtttggtactttggtttatgaaccagataccacaagagttcaagaataa-----ttcaattcaaatatt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
10342209 |
atttgtcaaaagtaaacaaaaaagattctatgtttggtactttggtttatgaaccagataccacaagagctcaagaataatatgttggggttcaaatatt |
10342308 |
T |
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| Q |
196 |
ttgcatgtgagaaaagcaaaggctgcattctgagactgggaaagtcaatgtagatgatg |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
10342309 |
ttgcatgtgagaaaagcaaaggctgcattctgagattggg-aagtcaatgtagatgatg |
10342366 |
T |
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