View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_32 (Length: 260)
Name: NF18928_high_32
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 22727171 - 22726955
Alignment:
| Q |
20 |
gaacagggagacatattttgaaagaaatgggatttatttgtcatgttgaacatcctcacaagtttatttcaaattaacttgccacccttgaaacacgtcc |
119 |
Q |
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| T |
22727171 |
gaacagagagacatattttgaaagaaatgggatttatttgtcatgttgaacatcctcacaagtttatttcaaattaccttgccacccttgaaactcctcc |
22727072 |
T |
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| Q |
120 |
agaattgaggcaagaagcttggaatctggctaatgataggtacatatataattgtagatattgtgatttctatctttattatgctgattgtgtatattca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22727071 |
agaattgaggcaagaagcttggaatctggctaatgatagg----tatgtaattgtagatattgtgatttctatttttattatgctgattgtgtatattca |
22726976 |
T |
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| Q |
220 |
tggcatgcactttgttccact |
240 |
Q |
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||| |||||||||||||||| |
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| T |
22726975 |
cggcctgcactttgttccact |
22726955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 2645403 - 2645541
Alignment:
| Q |
27 |
gagacatattttgaaagaaatgggatttatttgtcatgttgaacatcctcacaagtttatttcaaattaacttgccacccttgaaacacgtccagaattg |
126 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| ||| |
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| T |
2645403 |
gagacatattttgaaagaaatgggattcatttgtcatgttgaacatcctcacaagtttatttcgaattaccttgctacccttgaaacacctccagagttg |
2645502 |
T |
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| Q |
127 |
aggcaagaagcttggaatctggctaatgataggtacata |
165 |
Q |
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|| ||||||||||||||||||||||| |||||||||||| |
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| T |
2645503 |
agtcaagaagcttggaatctggctaacgataggtacata |
2645541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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