View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_39 (Length: 244)
Name: NF18928_high_39
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45606916 - 45606694
Alignment:
| Q |
1 |
caacaaataaagacactaatattcccatctaatgtttaaccgcatgatttatgttttttggttgtatagttatnnnnnnnnntgtttatattggccgttt |
100 |
Q |
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| T |
45606916 |
caacaaataaagacactaatattcccatctaatgtttaaccgcatgatttatgttttttggttgtatagttataaaaaaaa-tgtttatattggccgttt |
45606818 |
T |
|
| Q |
101 |
aagtataaaagacaatacaaaaaataaagtcatataacttttggggtactttgaacatgaaatctactaattttgaaaaagattggagcaaagaaatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
45606817 |
aagtataaaagacaatacaaaaaataaagtcatataacttttggggtactttgaacatgaaatctactacttttgaaaaagattggagcaaagatatatg |
45606718 |
T |
|
| Q |
201 |
ttaaacaatgatacattagggtcc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
45606717 |
ttaaacaatgatacattagggtcc |
45606694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 45616920 - 45616981
Alignment:
| Q |
116 |
tacaaaaaataaagtcatataacttttggggtactttgaacatgaaatctactaattttgaa |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45616920 |
tacaaaaaataaagtcatataacttttggggtactttgaacatgaaatctactcattttgaa |
45616981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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