View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_4 (Length: 551)
Name: NF18928_high_4
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 37053386 - 37052865
Alignment:
| Q |
12 |
atgaagggaacactgagagatctcggcaaagcaggaaggattgcttttgaacagactgaactggtannnnnnnncattttgcatattttcactggacaat |
111 |
Q |
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| T |
37053386 |
atgaagggaacactgagagatctcggcaaagcaggaaggattgcttttgaacagactgaactggtattttttttcattttgcatattttcactggacaat |
37053287 |
T |
|
| Q |
112 |
gtcttctcctgttataaagtaaccaagaatataatatgttattcattctgcattcagcattacactttaagaataaaagaactaacaaactctagagacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37053286 |
gtcttctcctgttataaagtaaccaagaatataatatgttattcattccgcattcggcattacactttaagaataaaagaactaacaa-ctctagagacc |
37053188 |
T |
|
| Q |
212 |
cagtttcgttttcgtgtaacctggatgttggatcttctcgagttgtcacatcacatggcattatgatgcaacactagagaattttggcataggatcataa |
311 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37053187 |
cagttccgttttcgtgtaacctggatgttggatcttctcgagttgtcacatcacatggcattatgatgcaacactagagaattttggcataggatcataa |
37053088 |
T |
|
| Q |
312 |
atgatttcatttatgataaatactaagaaacagattgtgtctatttgctacctttttgtttggattacttgccctcaaaatccaatgcaaattagagtgt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37053087 |
atgatttcatttatgataaatactaagaaacagattgtgtctatttgctacctttttgtttggattacttgccctcaaaatccaatgcaaattagagtgt |
37052988 |
T |
|
| Q |
412 |
aatccgttagtggtcaccagtttgaggtttctttcttgacatgacctgttctcaaccaaagatgcttcaaatttcatgtctaatagtattacttttattt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37052987 |
aatccgttagtggtcaccagtttgaggtttctttcttgacatgacctgttctcaaccaaagatgcttcaaatttcatgtctaatagtattacttttattt |
37052888 |
T |
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| Q |
512 |
ttaggatttttcaacaacagatc |
534 |
Q |
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| T |
37052887 |
ttaggatttttcaacaacagatc |
37052865 |
T |
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