View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_41 (Length: 239)
Name: NF18928_high_41
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 16790259 - 16790036
Alignment:
| Q |
17 |
aggtatcatagatggtaatgacgatttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaaga |
116 |
Q |
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| T |
16790259 |
aggtatcatggatggtaatgacgatttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaaga |
16790160 |
T |
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| Q |
117 |
ctgcattaatttttctattagnnnnnnnaaaacttattcaataaatcgtttgacc-nnnnnnnncttctcatatgctacctttgttggaattgatcatat |
215 |
Q |
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| T |
16790159 |
ctgcattaatttttatattactttttttaaaacttattcaataaatcatttgaccttttttcttcttctcatatgctacctttattggaattgatcatat |
16790060 |
T |
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| Q |
216 |
tttacttcaatatctatggccttc |
239 |
Q |
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|||||||||| ||||||||||||| |
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| T |
16790059 |
tttacttcaacatctatggccttc |
16790036 |
T |
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