View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_45 (Length: 229)
Name: NF18928_high_45
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 28094690 - 28094491
Alignment:
| Q |
19 |
cttggttcaccaagatgataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccg |
118 |
Q |
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| T |
28094690 |
cttggttcaccaagatgataatgtttttgataagactattgcagaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccg |
28094591 |
T |
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| Q |
119 |
aaggcaaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttga |
218 |
Q |
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| T |
28094590 |
aaggcaaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttga |
28094491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 26156072 - 26156246
Alignment:
| Q |
24 |
ttcaccaagatgataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggc |
123 |
Q |
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| T |
26156072 |
ttcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagc |
26156171 |
T |
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| Q |
124 |
aaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttga |
198 |
Q |
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| T |
26156172 |
agggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttga |
26156246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 26169370 - 26169544
Alignment:
| Q |
24 |
ttcaccaagatgataatgtttttgataagactattgcggaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggc |
123 |
Q |
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| T |
26169370 |
ttcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagc |
26169469 |
T |
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| Q |
124 |
aaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttga |
198 |
Q |
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| T |
26169470 |
agggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttga |
26169544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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