View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18928_high_46 (Length: 227)
Name: NF18928_high_46
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32132589 - 32132809
Alignment:
| Q |
1 |
ttcattataataaaaatgttcagaacctcatactagtatattaatagaatataacatctgtatattccatcaaagtccttgcattagagagcttgaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32132589 |
ttcattataataaaaatgttcagaacctcatactagtatattaatagaatataacatttgtatattccatcaaagtccttgcattagagagcttgaatca |
32132688 |
T |
|
| Q |
101 |
atgatgcagagtcactatgcctttgcatcatccactcaaccattttaatcacatttccttaaacagtttgcaatccaatgactctcactttacagcaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32132689 |
atgatgcagagtcactatgcctttgcatcatccactcaaccattttaatcaaatttccttaaacagtttgcaatccaatgactctcactttacagcaatt |
32132788 |
T |
|
| Q |
201 |
gacaagtagtagggtagtatt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32132789 |
gacaagtagtagggtagtatt |
32132809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 36470707 - 36470812
Alignment:
| Q |
53 |
aacatctgtatattccatcaaagtccttgcattagagagcttgaatcaatgatgcagagtca----ctatgcctttgcatcatccactcaaccattttaa |
148 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
36470707 |
aacatttgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatatgcctttgcatcatcacttcaaccattttca |
36470806 |
T |
|
| Q |
149 |
tcacat |
154 |
Q |
| |
|
|||||| |
|
|
| T |
36470807 |
tcacat |
36470812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 21188160 - 21188105
Alignment:
| Q |
59 |
tgtatattccatcaaagtccttgcattagagagcttgaatcaatgatgcagagtca |
114 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
21188160 |
tgtatattccatcaaagtccacacatcagagagcttgaatcaatgatgcagagtca |
21188105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 29390124 - 29390047
Alignment:
| Q |
59 |
tgtatattccatcaaagtccttgcattagagagcttgaatcaatgatgcagagtcactat----gcctttgcatcatc |
132 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29390124 |
tgtatattccattaaagtccacacatcagagagcttgaatcaatgatgcagagtcaatatatacgcctttgcatcatc |
29390047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University