View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_high_5 (Length: 545)
Name: NF18928_high_5
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 10461526 - 10461009
Alignment:
| Q |
18 |
gttttgacgtactaattacaatcacatgcatttatttaggccctgaattaaatataacatggttttgtttggtttgatttcattactgaacaatgttccc |
117 |
Q |
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| T |
10461526 |
gttttgacgtactaattacaatcacatgcatttatttaggccctgaattaaatataacatggttttgtttggtttgatttcattactgaacaatgttccc |
10461427 |
T |
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| Q |
118 |
caaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaaattcccatta |
217 |
Q |
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| T |
10461426 |
caaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaaattcccatta |
10461327 |
T |
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| Q |
218 |
aattatgaatcaaataatttgatgttacaatcattttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatagaa |
317 |
Q |
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| T |
10461326 |
aattatgaatcaaataatttgatgttacaatcattttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatagaa |
10461227 |
T |
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| Q |
318 |
gcttacgtgtaaatttgatatttggaatttcaaacataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttaggcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10461226 |
gcttacgtgtaaatttgatatttggaatttcaaacataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttaggcc |
10461127 |
T |
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| Q |
418 |
ttttaatttgttccccttctttagtagtattaggcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaaaa |
517 |
Q |
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| T |
10461126 |
ttttaatttgttccccttctttagtagtattaggcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaaaa |
10461027 |
T |
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| Q |
518 |
gctaatcttgtccctatg |
535 |
Q |
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| T |
10461026 |
gctaatcttgtccctatg |
10461009 |
T |
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