View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18928_high_7 (Length: 497)

Name: NF18928_high_7
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18928_high_7
NF18928_high_7
[»] chr8 (22 HSPs)
chr8 (161-492)||(24576180-24576511)
chr8 (41-251)||(38606828-38607038)
chr8 (41-248)||(5321962-5322171)
chr8 (41-251)||(1251477-1251686)
chr8 (41-214)||(5573716-5573888)
chr8 (34-251)||(31596694-31596911)
chr8 (62-213)||(29367076-29367227)
chr8 (34-182)||(1240894-1241041)
chr8 (57-251)||(31273578-31273772)
chr8 (41-193)||(15714695-15714847)
chr8 (104-251)||(33286116-33286263)
chr8 (42-214)||(26493338-26493507)
chr8 (34-166)||(24575900-24576023)
chr8 (60-136)||(15233242-15233318)
chr8 (138-216)||(38606757-38606835)
chr8 (79-251)||(32959459-32959631)
chr8 (41-95)||(26914691-26914745)
chr8 (138-229)||(5573881-5573973)
chr8 (138-214)||(15714626-15714702)
chr8 (138-188)||(24919875-24919925)
chr8 (36-93)||(24537977-24538034)
chr8 (142-215)||(28700245-28700318)
[»] chr3 (38 HSPs)
chr3 (41-251)||(3785861-3786071)
chr3 (41-251)||(3823550-3823761)
chr3 (34-215)||(42637949-42638130)
chr3 (41-251)||(19280099-19280306)
chr3 (42-251)||(44080155-44080364)
chr3 (34-213)||(31545565-31545732)
chr3 (34-236)||(1705663-1705863)
chr3 (34-195)||(26308633-26308794)
chr3 (56-251)||(9710739-9710928)
chr3 (34-193)||(5341833-5341992)
chr3 (41-214)||(4169105-4169269)
chr3 (34-199)||(19624257-19624421)
chr3 (41-251)||(22432236-22432439)
chr3 (91-249)||(11509804-11509962)
chr3 (138-251)||(27040684-27040797)
chr3 (44-199)||(27707625-27707779)
chr3 (60-136)||(27335402-27335478)
chr3 (41-147)||(42481303-42481409)
chr3 (50-136)||(13358101-13358187)
chr3 (178-251)||(31545425-31545498)
chr3 (163-254)||(11501397-11501488)
chr3 (149-241)||(5341989-5342081)
chr3 (99-216)||(23163262-23163380)
chr3 (138-241)||(3823754-3823856)
chr3 (154-241)||(19280315-19280402)
chr3 (46-200)||(27079301-27079454)
chr3 (46-200)||(27085098-27085251)
chr3 (138-199)||(3786064-3786124)
chr3 (45-110)||(11501310-11501375)
chr3 (142-229)||(39126271-39126358)
chr3 (155-216)||(11501242-11501303)
chr3 (133-229)||(27335310-27335406)
chr3 (60-136)||(27365008-27365084)
chr3 (165-212)||(13359005-13359052)
chr3 (163-241)||(42637863-42637939)
chr3 (350-399)||(20118762-20118811)
chr3 (59-91)||(39126222-39126254)
chr3 (51-95)||(55165100-55165144)
[»] chr7 (28 HSPs)
chr7 (41-251)||(31303352-31303562)
chr7 (50-256)||(20556660-20556866)
chr7 (41-251)||(18312726-18312935)
chr7 (41-251)||(21548352-21548561)
chr7 (41-256)||(5083792-5084006)
chr7 (41-199)||(21589574-21589732)
chr7 (34-146)||(28804983-28805094)
chr7 (41-167)||(4290810-4290935)
chr7 (143-251)||(28805125-28805233)
chr7 (138-229)||(22033162-22033252)
chr7 (138-236)||(21589725-21589823)
chr7 (34-212)||(15958306-15958485)
chr7 (41-228)||(22740659-22740844)
chr7 (154-241)||(28804891-28804978)
chr7 (154-229)||(22032982-22033056)
chr7 (138-199)||(4290928-4290989)
chr7 (138-229)||(18312928-18313019)
chr7 (138-241)||(31303555-31303657)
chr7 (138-240)||(21548554-21548655)
chr7 (41-106)||(5174910-5174975)
chr7 (162-251)||(32964652-32964741)
chr7 (154-229)||(5174816-5174891)
chr7 (133-240)||(32964848-32964955)
chr7 (50-136)||(27523496-27523582)
chr7 (138-199)||(5083739-5083799)
chr7 (138-199)||(15958259-15958320)
chr7 (60-136)||(32964776-32964852)
chr7 (60-136)||(46943761-46943838)
[»] chr4 (27 HSPs)
chr4 (41-250)||(16583496-16583705)
chr4 (41-251)||(9808973-9809183)
chr4 (41-251)||(33179759-33179969)
chr4 (41-251)||(17633341-17633551)
chr4 (46-251)||(8740796-8741001)
chr4 (59-240)||(55666844-55667023)
chr4 (41-250)||(19596680-19596891)
chr4 (41-187)||(1966833-1966979)
chr4 (62-251)||(9810659-9810848)
chr4 (46-199)||(35544425-35544577)
chr4 (43-200)||(42908519-42908675)
chr4 (138-241)||(1966739-1966840)
chr4 (41-215)||(14350999-14351171)
chr4 (133-226)||(24669270-24669363)
chr4 (164-252)||(25007625-25007712)
chr4 (138-241)||(14351164-14351267)
chr4 (154-229)||(17633258-17633333)
chr4 (154-214)||(9810881-9810941)
chr4 (154-241)||(19596901-19596988)
chr4 (161-251)||(19746942-19747032)
chr4 (161-251)||(19792774-19792864)
chr4 (338-399)||(5518758-5518819)
chr4 (154-214)||(9809194-9809254)
chr4 (154-214)||(42908685-42908745)
chr4 (60-241)||(24669081-24669274)
chr4 (353-492)||(1638106-1638246)
chr4 (119-171)||(20874812-20874864)
[»] chr2 (13 HSPs)
chr2 (34-251)||(30906044-30906261)
chr2 (41-251)||(43900427-43900637)
chr2 (48-236)||(45305881-45306068)
chr2 (41-171)||(1400774-1400903)
chr2 (138-241)||(1400678-1400781)
chr2 (138-241)||(28527228-28527330)
chr2 (41-164)||(28527323-28527445)
chr2 (41-136)||(33667329-33667424)
chr2 (138-237)||(33667417-33667516)
chr2 (154-237)||(41212424-41212507)
chr2 (336-492)||(29711179-29711335)
chr2 (67-199)||(7378495-7378625)
chr2 (138-241)||(30905955-30906058)
[»] scaffold1126 (2 HSPs)
scaffold1126 (41-241)||(209-409)
scaffold1126 (138-229)||(124-216)
[»] chr6 (39 HSPs)
chr6 (41-229)||(10304700-10304888)
chr6 (41-250)||(3222332-3222541)
chr6 (41-251)||(22608260-22608469)
chr6 (50-199)||(33815025-33815174)
chr6 (41-249)||(23595055-23595253)
chr6 (41-146)||(138715-138820)
chr6 (41-146)||(146736-146841)
chr6 (42-229)||(3620761-3620947)
chr6 (41-145)||(9068411-9068514)
chr6 (109-251)||(11108144-11108286)
chr6 (162-241)||(2430511-2430591)
chr6 (161-249)||(24386336-24386424)
chr6 (41-95)||(2430607-2430661)
chr6 (155-241)||(11108074-11108160)
chr6 (138-229)||(9068507-9068598)
chr6 (161-216)||(10304630-10304685)
chr6 (342-492)||(27860725-27860876)
chr6 (34-136)||(2834976-2835078)
chr6 (164-228)||(13767125-13767189)
chr6 (161-248)||(20084578-20084665)
chr6 (154-241)||(30056030-30056117)
chr6 (138-228)||(3222534-3222624)
chr6 (155-216)||(9068327-9068388)
chr6 (149-241)||(2835075-2835167)
chr6 (138-241)||(138620-138722)
chr6 (138-241)||(146641-146743)
chr6 (139-210)||(7915696-7915767)
chr6 (161-251)||(138813-138902)
chr6 (161-251)||(146834-146923)
chr6 (41-95)||(7706865-7706919)
chr6 (61-241)||(9474543-9474718)
chr6 (336-397)||(16343838-16343899)
chr6 (138-190)||(2430654-2430706)
chr6 (140-195)||(2365649-2365704)
chr6 (138-252)||(7706757-7706872)
chr6 (165-251)||(7915596-7915683)
chr6 (41-91)||(18980357-18980407)
chr6 (154-240)||(23595259-23595345)
chr6 (41-91)||(24386266-24386316)
[»] chr5 (28 HSPs)
chr5 (41-251)||(13312498-13312707)
chr5 (41-251)||(33958980-33959189)
chr5 (41-164)||(35922718-35922841)
chr5 (41-246)||(22169361-22169566)
chr5 (34-251)||(43461694-43461910)
chr5 (45-225)||(19621477-19621656)
chr5 (41-189)||(38521968-38522115)
chr5 (41-135)||(42034771-42034865)
chr5 (63-251)||(43262708-43262910)
chr5 (46-251)||(31189475-31189681)
chr5 (154-251)||(35922607-35922704)
chr5 (102-209)||(36169394-36169501)
chr5 (138-241)||(13312700-13312799)
chr5 (60-125)||(30704398-30704463)
chr5 (154-238)||(15221682-15221766)
chr5 (176-251)||(16095512-16095587)
chr5 (154-253)||(33958873-33958971)
chr5 (138-229)||(42034858-42034949)
chr5 (44-102)||(2477302-2477360)
chr5 (161-215)||(15221571-15221625)
chr5 (140-241)||(36169310-36169410)
chr5 (140-216)||(22169561-22169637)
chr5 (34-110)||(30045888-30045964)
chr5 (36-95)||(15221619-15221678)
chr5 (133-214)||(30704321-30704402)
chr5 (60-136)||(7156106-7156182)
chr5 (175-229)||(7156001-7156055)
chr5 (175-225)||(31189712-31189762)
[»] scaffold0251 (1 HSPs)
scaffold0251 (43-252)||(10617-10826)
[»] chr1 (30 HSPs)
chr1 (41-234)||(29677085-29677267)
chr1 (34-251)||(34364132-34364347)
chr1 (41-241)||(34490098-34490297)
chr1 (41-214)||(38951840-38952016)
chr1 (34-173)||(29167803-29167941)
chr1 (34-171)||(42604197-42604334)
chr1 (338-483)||(25408268-25408414)
chr1 (149-254)||(13350879-13350984)
chr1 (41-191)||(25238436-25238585)
chr1 (138-241)||(34490290-34490393)
chr1 (41-199)||(5831483-5831641)
chr1 (41-95)||(2569963-2570017)
chr1 (61-249)||(517433-517623)
chr1 (138-238)||(5831634-5831734)
chr1 (139-251)||(5855006-5855117)
chr1 (133-241)||(5855201-5855309)
chr1 (60-195)||(9468064-9468199)
chr1 (138-229)||(2570010-2570100)
chr1 (61-136)||(2996026-2996101)
chr1 (154-239)||(29676992-29677077)
chr1 (161-229)||(13351010-13351078)
chr1 (138-198)||(38244803-38244863)
chr1 (138-251)||(9929874-9929988)
chr1 (167-225)||(34364361-34364419)
chr1 (161-214)||(9929662-9929715)
chr1 (149-213)||(25238589-25238653)
chr1 (336-399)||(48637796-48637859)
chr1 (188-238)||(34941712-34941762)
chr1 (154-199)||(29167757-29167802)
chr1 (154-214)||(28499644-28499704)
[»] scaffold0126 (1 HSPs)
scaffold0126 (119-251)||(21558-21688)
[»] scaffold0123 (1 HSPs)
scaffold0123 (41-199)||(24021-24180)
[»] scaffold0043 (1 HSPs)
scaffold0043 (60-136)||(87036-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (60-136)||(112159-112235)
[»] scaffold0103 (1 HSPs)
scaffold0103 (353-479)||(40972-41099)
[»] scaffold0013 (1 HSPs)
scaffold0013 (335-485)||(4223-4374)
[»] scaffold0291 (1 HSPs)
scaffold0291 (60-110)||(5897-5947)
[»] scaffold0213 (1 HSPs)
scaffold0213 (138-198)||(24935-24995)
[»] scaffold0205 (1 HSPs)
scaffold0205 (335-371)||(10733-10769)
[»] scaffold0092 (1 HSPs)
scaffold0092 (374-467)||(21427-21521)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 161 - 492
Target Start/End: Original strand, 24576180 - 24576511
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatttttaataaa 260  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  24576180 gtggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctaccaatctttatttttaataaa 24576279  T
Q  261 tagccttggaattattatatttcttaaaaagatgaaccaaccaaaggatgttaacatgcagtattaataatggactggaccggtcacaagaccactcaca 360  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  24576280 tagccttggaattattagatttcttaaaaagatgaaccaaccaaaggatgttaacatgcagtattaataatgatctggaccggtcacaagaccactcaca 24576379  T
Q  361 tggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtgacacat-ggagcacacctcctcgca 459  Q
    ||||||||| | |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || |||||||||||||||    
T  24576380 tggctacacatgaactataatatgtcgccttaaggctacgtgctcaagggatcaggccaattttcctgcatcgtgccacataggtgcacacctcctcgca 24576479  T
Q  460 aggatcacactgcacatgtccttctctgctcct 492  Q
    |||||||| || | |||||||||||| ||||||    
T  24576480 aggatcacgctac-catgtccttctccgctcct 24576511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 38606828 - 38607038
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||||||| |||| ||| || |||||||||||||||||| |||    
T  38606828 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacacgcattttcgttgcgtgaccacatttttcagcttctaaatagt 38606927  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||| ||| |||| |||||| |||||||| || | ||||||| | ||||||||||||||| |||||| |||||||||  ||||||||||| || |||||||    
T  38606928 ggtaacgcaactgaaaaaatgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgtctac 38607027  T
Q  241 cgatctttatt 251  Q
    | || ||||||    
T  38607028 caatatttatt 38607038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 5321962 - 5322171
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||  |  ||||||||||||||||| | |    
T  5321962 tgaccactatttttttagaatttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgatcatatttttcagcttctaaataat 5322061  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacac--attacgggtgtct 238  Q
    | ||||| || | |||||| ||| ||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||| |||||||  |||| |||| |||    
T  5322062 gatcacgcaattgaaaaaatgtgatcacacagaccatatatttggttaattgaaatttttgagagtgatacaaaggagtgtacacatattaagggtttct 5322161  T
Q  239 accgatcttt 248  Q
    ||||||||||    
T  5322162 accgatcttt 5322171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 1251477 - 1251686
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||  || ||||||||||   ||  | |||||||||| || |||| |||    
T  1251477 tgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcgcgcacattttagttca-tgatcacatttttcaggttttaaatagt 1251575  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| |||| |||||| |||||| |||| | ||||||||| |||||||||||||||||||||||||||||| |  ||||||||||| || |||||||    
T  1251576 ggtcacgcaactgaaaaaatgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctac 1251675  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  1251676 caatctttatt 1251686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 5573888 - 5573716
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| | |||||||||||   || || ||||||||| |||||||| |||    
T  5573888 tgaccactatttttcaa-aatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttccatgaccacatttttcaacttctaaatagt 5573790  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    ||||||| || | |||||| || |||||| | | |||||||||||||||||||||| ||||||| || ||||||    
T  5573789 ggtcacgcaattgaaaaaatgtagtcacatatatcatatatttggttaactgaaatgttcgagaatgatacaaa 5573716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 31596911 - 31596694
Alignment:
Q  34 agttgtctgaccacta-tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttc 132  Q
    |||||| |||||| || |||||||| ||||||||||||||| ||||||||||| ||||| | |  ||||||| |||||| || || ||||||||| ||||    
T  31596911 agttgtgtgaccattagtttttccataatttatttggttaattaagtggaaaaatagtgattacacgcattt-agttgtctgaccacatttttcatcttc 31596813  T
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgg 232  Q
    |||| |||||| ||| |||| |||||| ||||||||||| | |||||||||| ||||||| ||||||  | ||||||||||||   |||||| |||| |     
T  31596812 taaatagtggtaacgcaactgaaaaaatgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaaga 31596713  T
Q  233 gtgtctaccgatctttatt 251  Q
    ||||||||| |||||||||    
T  31596712 gtgtctaccaatctttatt 31596694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 29367076 - 29367227
Alignment:
Q  62 ttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacg 161  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||| || |||||||||||||| ||| |||||||||  || | ||||||      
T  29367076 ttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcttcaaaatagtggtcacacaattgaaaaaata 29367175  T
Q  162 tggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaa 213  Q
    |||| ||| ||| ||||||||| ||||| | |||||||| |||||| |||||    
T  29367176 tggttacatagaccatatatttagttaattaaaattttcaagagtgatacaa 29367227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 1240894 - 1241041
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| || ||||||||||   || || |||||||||||||||    
T  1240894 agttgtgtgaccactatttttccataatttatttggttaactaagtgggaaaatagtggtcacgcacattttagtt-catgaccacatttttcagcttct 1240992  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatt 182  Q
    ||| |||||||||  |||| ||||||  ||||| |||| | ||||||||    
T  1240993 aaatagtggtcacacaactgaaaaaatatggtctcacacaccatatatt 1241041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 57 - 251
Target Start/End: Original strand, 31273578 - 31273772
Alignment:
Q  57 agaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaa 156  Q
    ||||||||||||||||||| |||| |||| ||| | ||| | ||||||||| ||  || ||  ||||||||||||||||| || ||||||| |||| |||    
T  31273578 agaatttatttggttaacttagtgaaaaaatagcgttcacgtgcattttagctgcatgaccatatttttcagcttctaaataggggtcacgcaactgaaa 31273677  T
Q  157 aaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    | | |||| |||| ||| |||||||||| |||| ||||||||||||||||||||||||    | ||||||||| | || |||||| |||||||||    
T  31273678 acatgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctaccaatctttatt 31273772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 15714695 - 15714847
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||| |  ||||||||||  ||| ||  |||||||||||| |||| |||    
T  15714695 tgaccactattttttcgaaatttatttggttaactaagtggaaaaatagtggtcacggacattttagttacgtgaccatatttttcagcttttaaatagt 15714794  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactga 193  Q
     |||||  | || |||||| ||||| ||||||| ||||||||| |||||||||    
T  15714795 agtcacacagctgaaaaaatgtggttacacagaccatatatttagttaactga 15714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 33286263 - 33286116
Alignment:
Q  104 ttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgag 203  Q
    ||||||| ||| || |||||||||||||||||| |||||||||| || | |||||| |||||||| |||| ||||||||||||||| | || ||||  ||    
T  33286263 ttagttgcgtgaccacatttttcagcttctaaaaagtggtcacgcaattgaaaaaatgtggtcacgcagaccatatatttggttaattaaatttttttag 33286164  T
Q  204 agtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    || |||||||| |  ||||||||||| ||||||| ||| |||||||||    
T  33286163 aggggtacaaatgggtgtacacattaagggtgtccaccaatctttatt 33286116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 26493338 - 26493507
Alignment:
Q  42 gaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtg 141  Q
    ||||| || |||| ||||||||||||| |||||||| ||||||| |||| |||| ||||| |||||||| ||| || |||||||||||||||||| |||     
T  26493338 gaccattaatttttcagaatttatttgattaactaaatggaaaaatagttgtcacgcgca-tttagttgcgtgaccacatttttcagcttctaaatagta 26493436  T
Q  142 gtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    || ||  |||| |||||| ||| ||||||| |  |||||||||||||| |||||||||  | |||||||||||    
T  26493437 gttacacaactgaaaaaatgtgatcacacaaa--atatatttggttaattgaaatttttaaaagtggtacaaa 26493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 24575900 - 24576023
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||   ||         |||||| | |||||||||||||||    
T  24575900 agttgtctgaccactatttttccagaatttatttggttaaataagtgaaaaaatagtggtcacttgc---------gtgtggtcacatttttcagcttct 24575990  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtc 166  Q
    ||| |||||| ||||||||||||||| ||||||    
T  24575991 aaatagtggtaacgaaactcaaaaaatgtggtc 24576023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 15233318 - 15233242
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| || | ||||||| ||| ||||    
T  15233318 atttatttggttaattaagtgaaaaaatagtggtcatgcgcattttagttgcgtgaccacgtttttcaacttttaaa 15233242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 38606835 - 38606757
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagg 216  Q
    |||||||||| | || ||||||  |||||||||| | ||||||||| |||||||||||||||  |||||||||||||||    
T  38606835 agtggtcacgcagctaaaaaaatatggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaagg 38606757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 32959631 - 32959459
Alignment:
Q  79 tggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcata 178  Q
    ||||||| |||||||||  | ||||||||||||||| ||  |||||| ||||||| ||  ||||||||| || | |||||| ||| ||||||| | |||     
T  32959631 tggaaaaatagtggtcacacacattttagttgtgtgaccatattttttagcttcttaatggtggtcacgtaattgaaaaaatgtgatcacacaaatcatg 32959532  T
Q  179 tatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    |||||||||||  |||| |||| | | | ||||||||   |||| |||| |  |||||||||| |||||||||    
T  32959531 tatttggttaatcgaaaatttccataattgtacaaagtggtgtagacataaaaggtgtctaccaatctttatt 32959459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 26914691 - 26914745
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||| || ||||||    
T  26914691 tgaccactatttttcaagaatttatttggttaattgagtggaaaaataatggtca 26914745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 5573881 - 5573973
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagc-atatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| || | |||||| ||||||||| |||   |||||||| |||||||||||| ||  ||||||||||||| || |||||||||||    
T  5573881 agtggtcacgcaattaaaaaaatgtggtcacaaagacatatatatttagttaactgaaatcttttagagtggtacaaaagagtgtacacatta 5573973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 15714702 - 15714626
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||||||| |||| | |||| ||||||||| | | ||||||||| | |||||||||||||  |||||||||||||    
T  15714702 agtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactgaaatttttcagagtggtacaaa 15714626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 24919875 - 24919925
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggtta 188  Q
    |||||||||| | || |||||| ||||||||||||| ||||||||||||||    
T  24919875 agtggtcacgcaccttaaaaaatgtggtcacacagaacatatatttggtta 24919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 24537977 - 24538034
Alignment:
Q  36 ttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggt 93  Q
    |||| ||||||||| ||||||| |||||||||||||||| |  ||||||| |||||||    
T  24537977 ttgtgtgaccactaattttccaaaatttatttggttaaccatatggaaaaatagtggt 24538034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 28700245 - 28700318
Alignment:
Q  142 gtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaag 215  Q
    |||||| |||| | |||| ||||||| || || ||||||||||||||||| | |||||| ||||||||| ||||    
T  28700245 gtcacgcaactaacaaaatgtggtcatactgaacatatatttggttaacttagattttctagagtggtataaag 28700318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 3786071 - 3785861
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcattttt-cagcttctaaacag 139  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||| ||| ||  |||||| |||||| |||| ||    
T  3786071 tgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacgcgcattttagttgcgtgaccatattttttcagcttataaatag 3785973  T
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    |||||||| |||  |||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  3785972 tggtcacgtaacagaaaaaatgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtcta 3785873  T
Q  240 ccgatctttatt 251  Q
    || |||||||||    
T  3785872 ccaatctttatt 3785861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 3823761 - 3823550
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcattttt--cagcttctaaaca 138  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||||||  ||||||||||||| ||| ||  ||||||  |||||| |||| |    
T  3823761 tgaccactatttttccataatttatttggttaactaagtggaaaaa-agtggtcacacgcattttagttgcgtgaccatatttttttcagcttataaata 3823663  T
Q  139 gtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtct 238  Q
    ||||||||| |||  |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  3823662 gtggtcacgcaacagaaaaaatgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtct 3823563  T
Q  239 accgatctttatt 251  Q
    ||  |||||||||    
T  3823562 actaatctttatt 3823550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 42637949 - 42638130
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| | |||||||||||||| ||| || |||||||||||||||    
T  42637949 agttgtctgaccactattttttcagaatttatttggttaactaagttgaaaaatagtggttacgcgcattttagttgcgtgaccacatttttcagcttct 42638048  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaag 215  Q
    ||| |||||||||| |||| |||||| ||||||| | | | ||||||||| |||||||||||||||||||||| ||| ||||    
T  42638049 aaatagtggtcacgcaactgaaaaaatgtggtcatatataccatatatttagttaactgaaattttcgagagttgtataaag 42638130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 19280306 - 19280099
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| || ||||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||| || ||||||||| ||||||||||||    
T  19280306 tgaccactaatttttcaaaatttatttggttaactaagtggaaaa-tagtggtcacgcgaattttagttgcgtgaccacatttttcaacttctaaacagt 19280208  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| | || |||||| |||||||| |||| ||||||||||||||||| |||| ||    |||||||||||||  ||||||| ||| ||||||||||    
T  19280207 ggtcacgcatctgaaaaaatgtggtcactcagaccatatatttggttaactaaaatatt--ttagtggtacaaaggggtgtacactttaagggtgtctac 19280110  T
Q  241 cgatctttatt 251  Q
    |||||||||||    
T  19280109 cgatctttatt 19280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 44080364 - 44080155
Alignment:
Q  42 gaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtg 141  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| |||||| || || |||||||||| |||| || ||||||||| |||||||| ||||    
T  44080364 gaccactatttttccaaaatttttttggttaactaagtggaaaaatagtgggcacgcacattttagtt-tgtgaccacatttttcaacttctaaatagtg 44080266  T
Q  142 gtcacgaaact-caaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    |||||| |||| |||||||  ||||||||||||  |||||||||||||||||||||| |  ||||||||||||||  |||||||||||| || | ||||     
T  44080265 gtcacgcaactgcaaaaaatatggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaagatatgtacacattaaggatatctat 44080166  T
Q  241 cgatctttatt 251  Q
    |||||||||||    
T  44080165 cgatctttatt 44080155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 31545732 - 31545565
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| || |||||||||||||||    
T  31545732 agttgtgtgaccactatttttccagaatttattttgttaactaagtagaaaaatagtggtcatgcacattttagttgtgtgaccacatttttcagcttct 31545633  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaa 213  Q
    ||| |||||| ||  |||| |||||| |||            ||||||||||||||||||||||||||||||| ||||||    
T  31545632 aaatagtggttactcaactgaaaaaatgtg------------atatatttggttaactgaaattttcgagagtagtacaa 31545565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 1705663 - 1705863
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||  || ||  ||||||||||||||    
T  1705663 agttgtatgaccactagttttccagaaattatttggttaactaaggggaaaaatagtggtcacgcgcattttagttgcatgaccatatttttcagcttct 1705762  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacggg 233  Q
    ||| |||||||||| ||||  |||||  || ||||||| | ||| |||||||||||||||||||||  | | || |||| | | |||||||||||| |||    
T  1705763 aaatagtggtcacgcaact--aaaaatatgatcacacatatcatgtatttggttaactgaaattttttacaatgatacacaaggatgtacacattaaggg 1705860  T
Q  234 tgt 236  Q
    |||    
T  1705861 tgt 1705863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 26308633 - 26308794
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||| ||| || |||| ||||||||||    
T  26308633 agttgtgtgaccactaattttccagaatttatttggttaagtaagtggaaaaatagtggtcacgcgcattttaattgcgtgaccacattattcagcttct 26308732  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaa 195  Q
    ||| ||||||| |  || |  ||||| |||| |||||| | |||||||||| ||||||||||    
T  26308733 aaatagtggtcccagaattggaaaaatgtggccacacaaaccatatatttgattaactgaaa 26308794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 9710739 - 9710928
Alignment:
Q  56 cagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaa 155  Q
    |||||||||||||||||||||||||||||| ||||||||| | | |||| ||||| ||| || || ||||||||||||||  |||||||||| |||  ||    
T  9710739 cagaatttatttggttaactaagtggaaaaatagtggtcaagtgtattt-agttgcgtgaccacagttttcagcttctaagtagtggtcacgcaaccgaa 9710837  T
Q  156 aaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||  ||||||     | |||||||||||||||||||||||||  |||||||||||||||  |||||| |||| |||| |||||| |||||||||    
T  9710838 aaaatatggtca-----accatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctaccaatctttatt 9710928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 5341992 - 5341833
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| | |||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||  | ||||||||||| || || ||||||||| |||||    
T  5341992 agttgtgtaaccattatgttttcagaatttatttggttaactaagtggaaaaatagtggtcatatgtattttagttgtatgaccacatttttcaacttct 5341893  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactga 193  Q
    ||| |||||||||| | || ||||||  |||||||||| | |||||||||  ||||||||    
T  5341892 aaatagtggtcacgcagctaaaaaaatatggtcacacaaaccatatatttaattaactga 5341833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 4169105 - 4169269
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||| || ||||||||||| ||  || |||||||||||||||||| |||    
T  4169105 tgactactattttttcagaatttatttggttaactaaatggaaaaatagtggtcacgcacattttagttgcgttaccacatttttcagcttctaaatagt 4169204  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||||          || ||| ||||| ||| ||||||||| ||||||||||||||||||||  ||||||||    
T  4169205 ggtcacg---------caatgtgatcacatagaccatatatttagttaactgaaattttcgagataggtacaaa 4169269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 19624421 - 19624257
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||| |||||| ||| ||| ||||| |    
T  19624421 agttgtgtgaccacaatttttccagaatttatgtggttaactaagtggaaaaatagtggtcacgtgcattttagttgggtggccacatattttagcttat 19624322  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    ||| | |||||||  |||| || |||  || ||||  |||  ||||||||| ||||||||||||||    
T  19624321 aaata-tggtcacacaactgaagaaatatgatcacttagactatatatttgattaactgaaatttt 19624257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 22432439 - 22432236
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| || |||||||||||| ||||| |||||||| |||||| ||  |||||||||||||  || || ||||||||||||| |||| |||    
T  22432439 tgaccactattttttcataatttatttggtcaactatgtggaaaaatagtggacacacgcattttagttgattgaccacatttttcagcttttaaatagt 22432340  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    || |||| |||| ||||||  ||||       | ||||| |||| |||||||||||||||||||||  ||||| |  |||||||||||| || || ||||    
T  22432339 ggacacgcaactgaaaaaatatggt-------accatatttttgattaactgaaattttcgagagtaatacaaggatatgtacacattaaggatgcctac 22432247  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  22432246 caatctttatt 22432236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 11509962 - 11509804
Alignment:
Q  91 ggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaac 190  Q
    ||||| |||||||||||||| ||| || |||||||||||||||||| |  ||||||| || | |||||| ||||||||||| | |  |||||||||||      
T  11509962 ggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaataaaggtcacgcaagtgaaaaaatgtggtcacacaaatcgcatatttggttatt 11509863  T
Q  191 tgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttta 249  Q
    |||||||||  |||||||||||||||  ||||||||||| | ||||||| | |||||||    
T  11509862 tgaaatttttaagagtggtacaaaggggtgtacacattaagtgtgtctatcaatcttta 11509804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 27040684 - 27040797
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||  ||| ||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||  | |||||    
T  27040684 agtggtcacgcaactgaaaaattgtgatcacacagatcatatatttggttaaccgaaattttctagagtagtacaaaggaatgtacacattgagagtgtc 27040783  T
Q  238 taccgatctttatt 251  Q
     ||| |||||||||    
T  27040784 aacctatctttatt 27040797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 27707779 - 27707625
Alignment:
Q  44 ccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggt 143  Q
    ||||||||||||||||||||||||||||||  ||||| |||| |||||||||||| ||||||||||||| | || ||||||| || ||| |||  |||||    
T  27707779 ccactatttttccagaatttatttggttaatcaagtgaaaaaatagtggtcatgcacattttagttgtgcgaccacattttttagtttc-aaaatgtggt 27707681  T
Q  144 cacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||  || | |||||| |||| |||||| | |||||||||| |||| |||| ||||    
T  27707680 cacacaattgaaaaaatgtgggcacacaaaccatatatttgattaattgaattttt 27707625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 27335402 - 27335478
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||||||||||||||| ||||||||| | | |||||||||||||| || ||||||||||||||||||    
T  27335402 atttatttggttaactaagtggaaaaatagtggtcacgtgtattttagttgtgtgaccacatttttcagcttctaaa 27335478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 42481409 - 42481303
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||| || |||||| |  ||||||||||||||| ||  ||||||||| || |||| |||    
T  42481409 tgaccattattttttcagaatttatttggttaactaagtagaaaaataatggtcacgtacattttagttgtgtgaccatatttttcagtttttaaatagt 42481310  T
Q  141 ggtcacg 147  Q
    |||||||    
T  42481309 ggtcacg 42481303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 13358101 - 13358187
Alignment:
Q  50 tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    ||||| || |||||||||||||||||| |||||||| ||||||| | |||||||||| ||||||| ||  |||||||||||||||||    
T  13358101 ttttttcaaaatttatttggttaactatgtggaaaaatagtggtaacgcgcattttaattgtgtgaccatatttttcagcttctaaa 13358187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 31545498 - 31545425
Alignment:
Q  178 atatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||||  |||||||||| |||||||||    
T  31545498 atatttgattaactgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctaccaatctttatt 31545425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 11501397 - 11501488
Alignment:
Q  163 ggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttattttt 254  Q
    ||||||||||| ||||||||||||||||| |||||||| | ||||||| |||||| ||||||||||| | ||||| ||| ||| || |||||    
T  11501397 ggtcacacagatcatatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatcattgttttt 11501488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 5341989 - 5342081
Alignment:
Q  149 aactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||| |||||| ||||||||||||| |||||||| | ||||||||||||||  ||||| |||||||||  ||||| ||||| || ||||||||    
T  5341989 aactaaaaaaatgtggtcacacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacc 5342081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 23163380 - 23163262
Alignment:
Q  99 gcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactca--aaaaacgtggtcacacagagcatatatttggttaactgaaat 196  Q
    |||||||||||||||| ||  ||||||||||| ||| | |||||||| | |||| |  ||||| || |||||| ||| |||||||| | |||||||| ||    
T  23163380 gcattttagttgtgtgaccatatttttcagct-ctacatagtggtcatgcaactgataaaaaatgtagtcacatagaccatatattagattaactgatat 23163282  T
Q  197 tttcgagagtggtacaaagg 216  Q
    ||||||||||||||||||||    
T  23163281 tttcgagagtggtacaaagg 23163262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 3823754 - 3823856
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| ||||||||||||||||||||  ||||||||||||||||| ||||||   |||| ||||||| |  || ||| |||| |||||||    
T  3823754 agtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaatttttctgagtagtacaaacgggtgaacatattaagggtgtc 3823852  T
Q  238 tacc 241  Q
    ||||    
T  3823853 tacc 3823856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 19280315 - 19280402
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||||| || |||||||||| |||||||||| |||||| ||| |||  ||||||||||||| |  ||||||||||| |||||||||||    
T  19280315 aaaaaatgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacc 19280402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 27079301 - 27079454
Alignment:
Q  46 actatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaaca--gtggt 143  Q
    |||||||||| | |||||||||| |||||||||||||||| |  |||||| ||||||||||| |  ||| || |||||||    ||  ||| |  |||||    
T  27079301 actatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggt 27079397  T
Q  144 cacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttc 200  Q
    || | |||| |||||  ||||||||||||| |||||||||||||||| |||||||||    
T  27079398 catgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaattttc 27079454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 27085098 - 27085251
Alignment:
Q  46 actatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaaca--gtggt 143  Q
    |||||||||| | |||||||||| |||||||||||||||| |  |||||| ||||||||||| |  ||| || |||||||    ||  ||| |  |||||    
T  27085098 actatttttctataatttatttgattaactaagtggaaaaatgatggtcacgcgcattttagctacgtgaccacattttt---tttgaaaaaattgtggt 27085194  T
Q  144 cacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttc 200  Q
    || | |||| |||||  ||||||||||||| |||||||||||||||| |||||||||    
T  27085195 catgcaactgaaaaattgtggtcacacagaccatatatttggttaaccgaaattttc 27085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 3786064 - 3786124
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||||||||| |||| ||||||||||||||||||||  ||||||||||||||||| ||||||    
T  3786064 agtggtcacgcaact-aaaaaacgtggtcacacagacaatatatttggttaactggaatttt 3786124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 11501375 - 11501310
Alignment:
Q  45 cactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttg 110  Q
    ||||||||||  | ||||||||||||||||||| ||||||| ||||||||| || |||||||||||    
T  11501375 cactatttttttaaaatttatttggttaactaattggaaaaatagtggtcacgcacattttagttg 11501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 39126271 - 39126358
Alignment:
Q  142 gtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||| |||| |||||| || |||||||||| ||||||||||||||||| |||||||  ||| |  ||||||| | |||||||||||    
T  39126271 gtcacgcaactaaaaaaatgttgtcacacagatcatatatttggttaacttaaatttttcagaataatacaaagaagtgtacacatta 39126358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 11501303 - 11501242
Alignment:
Q  155 aaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagg 216  Q
    ||||| ||||||||||||| ||||||||||||||  ||||| |||  |||||||||||||||    
T  11501303 aaaaatgtggtcacacagaccatatatttggttatttgaaaattttcagagtggtacaaagg 11501242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 27335406 - 27335310
Alignment:
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||| ||| |||||| |||| |||||| ||||||||||| | |||||  |||||||||| ||| |||  ||| |||||||||||  |||||||||||    
T  27335406 taaatagttgtcacgcaactaaaaaaatgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacatta 27335310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 27365008 - 27365084
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||| ||||||||||| |||||||||  || ||||||| || ||| |  |||||||||| |||||||    
T  27365008 atttatttggttaattaagtggaaaaatagtggtcacacgtattttagctgcgtgactacatttttcagtttctaaa 27365084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 13359005 - 13359052
Alignment:
Q  165 tcacacagagcatatatttggttaactgaaattttcgagagtggtaca 212  Q
    ||||||||| |||||||||  ||||||||||||||| |||||||||||    
T  13359005 tcacacagaccatatatttaattaactgaaattttccagagtggtaca 13359052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 42637939 - 42637863
Alignment:
Q  163 ggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    ||||||||| |  |||||||||||||| |||||||||  ||  ||||||||||| |||| ||||||| |||||||||||    
T  42637939 ggtcacacaaataatatatttggttaattgaaatttttcag--tggtacaaagggatgtgcacattaagggtgtctacc 42637863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 20118762 - 20118811
Alignment:
Q  350 gaccactcacatggctacacgttaactataatacgccgccttaaggctac 399  Q
    ||||||||||| ||||||| ||  || |||||||||||||||||||||||    
T  20118762 gaccactcacacggctacatgtgtacaataatacgccgccttaaggctac 20118811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 39126254 - 39126222
Alignment:
Q  59 aatttatttggttaactaagtggaaaactagtg 91  Q
    ||||||||||||||||||||||||||| |||||    
T  39126254 aatttatttggttaactaagtggaaaaatagtg 39126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 55165144 - 55165100
Alignment:
Q  51 ttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    ||||||||||||||||||  ||||||||||||||| |||| ||||    
T  55165144 ttttccagaatttatttgaataactaagtggaaaaatagtagtca 55165100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 31303562 - 31303352
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||  || || |||||||||||||||||| |||    
T  31303562 tgaccactatgtttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcatgaccacatttttcagcttctaaatagt 31303463  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| || | |||||| |||||||| |||| ||| ||||||||| |||||||||||  |||||| |||||| | |||||||||||| ||||||||||    
T  31303462 ggtcacgcaattgaaaaaatgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctac 31303363  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  31303362 caatctttatt 31303352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 20556866 - 20556660
Alignment:
Q  50 tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaa 149  Q
    ||||| |||||||||||||||||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||||||||||||| |||||||||  |    
T  20556866 ttttttcagaatttatttggttaactaagtggaaaaatattggtcacgcgtattttagttgcgtgaccacatttttcagcttctaaatagtggtcacaca 20556767  T
Q  150 actcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttta 249  Q
    ||| ||||||  ||||||||| || ||||||||||||||||||||||||||||||||   ||||||  || ||||||||| |||||||||||||||||||    
T  20556766 actgaaaaaatatggtcacaccgaccatatatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctaccgatcttta 20556667  T
Q  250 tttttaa 256  Q
    || ||||    
T  20556666 ttcttaa 20556660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 18312935 - 18312726
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||   |||||||||||| |||  | |||||| ||||||||||| |||    
T  18312935 tgaccactatttttcaagaatttattaggttaactaagtggaaaaatagtggtcacatgcattttagttgcgtgagcacatttt-cagcttctaaatagt 18312837  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
     || ||| |||| |||| | ||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||  | ||||| ||| ||||||||||    
T  18312836 agtgacgcaactgaaaatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctac 18312737  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  18312736 caatctttatt 18312726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 21548561 - 21548352
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| | |||||||  ||||| ||| || ||||||||||||| |||| | |    
T  21548561 tgaccactatttttccagaatttatttggttaactaagtggaaaaacagtggttacgcgcattcgagttgcgtgaccacatttttcagcttttaaatatt 21548462  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||  |||| ||||||  |||||||||| | ||||| |||| ||||||||||||||| |||||||||||||| | |||| | ||||  |||||||||    
T  21548461 ggtcacacaactgaaaaaatatggtcacacataccatat-tttgattaactgaaattttcaagagtggtacaaagaagtgtatatattaaaggtgtctac 21548363  T
Q  241 cgatctttatt 251  Q
    |||||||||||    
T  21548362 cgatctttatt 21548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 41 - 256
Target Start/End: Original strand, 5083792 - 5084006
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||  ||||||| ||||| ||| ||  |||||||| |||||||| |||    
T  5083792 tgaccactatttttctagaatttatttcgttaacaaagttgaaaaatagtggtcacccgcattt-agttgcgtgaccatatttttcaacttctaaatagt 5083890  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| || | |||||| ||||||||||| | |||||||||| | || |||||||||||||| |  ||||||||  |||| ||||||  ||| | |||    
T  5083891 ggtcacgcaattgaaaaaatgtggtcacacataccatatatttgatgaattgaaattttcgagaataatacaaaggggtgtatacattaaaggtatttac 5083990  T
Q  241 cgatctttatttttaa 256  Q
    | ||||||||| ||||    
T  5083991 caatctttattcttaa 5084006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 21589732 - 21589574
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||  |||||||||||||  || || |||||||||||||||||| |||    
T  21589732 tgaccactatttttccagaacttatttgattaattaagtggaaaaatagtggtcacacgcattttagttgcatgaccacatttttcagcttctaaatagt 21589633  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    | ||||  |||| ||||||  |||||||| |||  ||||||||| || ||| |||||||    
T  21589632 gatcacacaactgaaaaaatatggtcacatagacaatatatttgattgactaaaatttt 21589574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 28804983 - 28805094
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||  ||||||||| |||||||| || |||||||||||||||    
T  28804983 agttgtgtgaccactatatttccataatttatttggttaactaagtggaaaaatagtggtc-cgcgcattttggttgtgtgaccacatttttcagcttct 28805081  T
Q  134 aaacagtggtcac 146  Q
    ||| |||| ||||    
T  28805082 aaatagtgatcac 28805094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 4290935 - 4290810
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| || ||  ||||||| ||| || ||||||||| |||||||| |||    
T  4290935 tgaccactagtttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcaca-cttagttgcgtgaccacatttttcaacttctaaatagt 4290837  T
Q  141 ggtcacgaaactcaaaaaacgtggtca 167  Q
    ||||||  |||| |||||| |||||||    
T  4290836 ggtcactcaactgaaaaaatgtggtca 4290810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 28805125 - 28805233
Alignment:
Q  143 tcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccg 242  Q
    ||||| |||| |||||| ||||||||||| | ||||||||||||||||| |||||||  |||||| ||||||||  | ||||||||| |||||||||||     
T  28805125 tcacgcaactgaaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctacca 28805224  T
Q  243 atctttatt 251  Q
    |||||||||    
T  28805225 atctttatt 28805233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 22033162 - 22033252
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||||||||||  |||||||||||| ||||||||||||||||| |||||||  ||| ||||||||||| ||||||||||||    
T  22033162 agtggtcacgcaactcaaaaaatatggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaagg-atgtacacatta 22033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 21589725 - 21589823
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgt 236  Q
    |||||||| | |||| |||||| ||||||||||||| ||||||||||| |||||||||||||  ||||||||| ||| | |||||||||||| ||||||    
T  21589725 agtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaagggtgt 21589823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 15958306 - 15958485
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaacta----gtggtcatgcgcattttagttgtgtggcctcatttttcagc 129  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||  ||||  |    ||| ||| || ||||| | ||| ||| || |||||||||||    
T  15958306 agttgtgtgaccactattttttcagaatttatttggttaaataagtaaaaaaaaaaattgtgatcacgcacatttaa-ttgcgtgaccacatttttcagc 15958404  T
Q  130 ttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtaca 212  Q
    ||||||| |||| ||| | |||| |||||  ||||||||||||| ||||||||| |||||||||||||||  |||||||||||    
T  15958405 ttctaaatagtg-tcatgcaacttaaaaat-gtggtcacacagaccatatatttagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 22740659 - 22740844
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| || || ||| ||  |||||||||| ||| ||  |||||||||||| |||| | |    
T  22740659 tgactactattttttcagaatttatttggttaactaagtggaaaaataatgatcacgcatattttagttgcgtgaccatatttttcagcttttaaata-t 22740757  T
Q  141 ggtcacgaaact-caaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatt 228  Q
    ||||||  ||||  |||||| ||||| ||||| |  |||||||| ||||| |||||||||| | | || |||||||  |||||||||||    
T  22740758 ggtcacacaactgaaaaaaatgtggttacacaaactatatatttagttaattgaaattttctaaactgatacaaag--atgtacacatt 22740844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 28804978 - 28804891
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||| |  |||||| |||| |||||||||||    
T  28804978 aaaaaatgtggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacc 28804891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 22033056 - 22032982
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||| ||||||||||| | ||||||||||||||||| |||||||  ||||||||||||||| ||||||||||||    
T  22033056 aaaaaatgtggtcacacataccatatatttggttaacttaaattttaaagagtggtacaaagg-atgtacacatta 22032982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 4290928 - 4290989
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||||||||| |||| |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  4290928 agtggtcacgcaactaaaaaaacgtggtcatacagatcatttatttggttaactgaaatttt 4290989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 18312928 - 18313019
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||| ||||||  | | |||||| | |||||||||||||| ||||||||||  |||||||||||||||| ||| |||||||    
T  18312928 agtggtcacgcaactaaaaaaatttagccacacaaaccatatatttggttagctgaaatttttcagagtggtacaaaggagtgtgcacatta 18313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 31303555 - 31303657
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||| | ||||||||| |||||||||||||||   |||||||| ||| | ||||| ||||||  ||||||    
T  31303555 agtggtcacgcaact-aaaaaatgtggtcacacataccatatattttgttaactgaaatttttttgagtggtataaaaggatgtagacattaaaggtgtc 31303653  T
Q  238 tacc 241  Q
    ||||    
T  31303654 tacc 31303657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 21548554 - 21548655
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| || |||  || ||||||||| ||||||||| |||||||||||||||  ||| |||||| ||||||| ||||||||| || ||||    
T  21548554 agtggtcacgcaactaaacaaatatgatcacacagaccatatatttagttaactgaaattttttagaatggtac-aaggaatatacacattaaggatgtc 21548652  T
Q  238 tac 240  Q
    |||    
T  21548653 tac 21548655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 5174975 - 5174910
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcatttta 106  Q
    ||||||||| |||| ||||||||||||| ||||||||||| |||| ||||||||| || |||||||    
T  5174975 tgaccactaatttttcagaatttatttgattaactaagtgtaaaaatagtggtcacgcacatttta 5174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 32964741 - 32964652
Alignment:
Q  162 tggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    |||||||||| | ||||||||| ||||||| ||||| |  ||||||||  ||| |||||||||||||| || |||||||| |||||||||    
T  32964741 tggtcacacataccatatatttagttaacttaaattctttagagtggtgtaaatgaatgtacacattaaggatgtctaccaatctttatt 32964652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 5174891 - 5174816
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||| ||| | ||||| | ||||||| || |||||||||||||||||| |||||||||||  ||||||||||||    
T  5174891 aaaaaatgtgattacacaaaccatatatatgattaactgaaattttcgagcgtggtacaaagagatgtacacatta 5174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 32964848 - 32964955
Alignment:
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgg 232  Q
    |||| |||||||||| |||| |||| | ||||||||||||| ||||||| | ||||||| |||||||  |||||| |||||| |  |||| ||||||  |    
T  32964848 taaatagtggtcacgcaactaaaaatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaag 32964947  T
Q  233 gtgtctac 240  Q
    ||||||||    
T  32964948 gtgtctac 32964955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 27523496 - 27523582
Alignment:
Q  50 tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    ||||| |||||||||||||||||| ||||||||||| |||| |||| || ||||||| |||| || ||   |||||||| |||||||    
T  27523496 ttttttcagaatttatttggttaattaagtggaaaaatagtagtcaagcacattttaattgtatgaccatgtttttcagtttctaaa 27523582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 5083799 - 5083739
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||||||||| |||| |||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  5083799 agtggtcacgtaact-aaaaaatgtggtcacaaagaccatatatttgattaactgaaatttt 5083739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 15958320 - 15958259
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||||||||  |||| |||||| |||||||||| || ||||||||||||||||| |||||||    
T  15958320 agtggtcacacaactaaaaaaatgtggtcacactgaccatatatttggttaacttaaatttt 15958259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 32964852 - 32964776
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    ||||||| |||||| ||||||||||| ||||||||| | |||||||||||   || ||  |||||||||||||||||    
T  32964852 atttattaggttaattaagtggaaaaatagtggtcacgtgcattttagttacatgaccatatttttcagcttctaaa 32964776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 46943761 - 46943838
Alignment:
Q  60 atttatttggttaactaagtg--gaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||||||||||   |||| ||||||||| |||||||||||||| |||  | || |||||||||||||||    
T  46943761 atttatttggttaactaagtgaaaaaaaatagtggtcacgcgcattttagttgcgtgatcaca-ttttcagcttctaaa 46943838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 16583705 - 16583496
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||| |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||  ||  |  ||||||||||||||||| |||    
T  16583705 tgactactattttaccataatttatttggttaattaagtggaaaaatagtggtcacgcgcattttagttgcatgatcatatttttcagcttctaaatagt 16583606  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| |||| |||||| |||||||||   | |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  16583605 ggtcacgcaactgaaaaaatgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctac 16583506  T
Q  241 cgatctttat 250  Q
    | ||||||||    
T  16583505 caatctttat 16583496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 9809183 - 9808973
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||| | |||||||| || |||||||||||||||| ||||||| ||||||||| |||||||| ||||| ||| |  |||||||||||||||||| |||    
T  9809183 tgaccattttttttccataaattatttggttaactaaatggaaaaatagtggtcacgcgcatttgagttgcgtgactacatttttcagcttctaaatagt 9809084  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| |||| |||||| |||||||| |||| ||||||||| |||||||||| ||||  | || |||||||| |  |||||| |||| ||||||| ||    
T  9809083 ggtcacgcaactgaaaaaatgtggtcacgcagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaac 9808984  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  9808983 ctatctttatt 9808973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 33179759 - 33179969
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||  ||||||| |||    
T  33179759 tgaccactacttttttagaatttatttgattaactaagtggaaaaatagtggtcacacgcattttagttgtgtggccacatttttcactttctaaatagt 33179858  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| | || |||| |  |||| ||||| | ||||||||| ||||| | |||||||||| ||||||| |||| ||| ||||||||| || |||||||    
T  33179859 ggtcacgcagctgaaaagatatggtaacacataccatatatttagttaattaaaattttcgatagtggtataaagaaatatacacattaaggatgtctac 33179958  T
Q  241 cgatctttatt 251  Q
    | ||| |||||    
T  33179959 caatcattatt 33179969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 17633341 - 17633551
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcag-cttctaaacag 139  Q
    ||||||| |||| |||| |||||||||||||||||||||  |||| ||||||||| |||||||||||||| ||| ||  ||||||||  |||||| |  |    
T  17633341 tgaccacaatttgtccaaaatttatttggttaactaagttaaaaaatagtggtcacgcgcattttagttgcgtgaccatatttttcaaacttctagat-g 17633439  T
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    |||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||  | |||||||||||||  |||||| |||| |||| || |    
T  17633440 tggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaa 17633539  T
Q  240 ccgatctttatt 251  Q
    || |||||||||    
T  17633540 cctatctttatt 17633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 8740796 - 8741001
Alignment:
Q  46 actatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtca 145  Q
    |||| ||||||| ||||||||| ||||||||||| ||||| ||||||||| ||||||||||||   ||| || |||||||||||||||||| |||| |||    
T  8740796 actacttttccataatttatttagttaactaagtagaaaaatagtggtcacgcgcattttagtac-gtgaccacatttttcagcttctaaatagtgatca 8740894  T
Q  146 cgaaactcaaaaaacg-tggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgat 244  Q
    || |||| ||||||   |||||||||||| |||| ||||| |||||||||| ||| ||||||| |||||| |||||||||||||   | |||||||||||    
T  8740895 cgcaactgaaaaaaatatggtcacacagatcatacatttgattaactgaaaattttgagagtgatacaaaagaatgtacacattgaagatgtctaccgat 8740994  T
Q  245 ctttatt 251  Q
    |||||||    
T  8740995 ctttatt 8741001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 55666844 - 55667023
Alignment:
Q  59 aatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaa 158  Q
    |||||||||| |||||||||||||||| ||||||||| |  ||||||||||  ||| || | ||||||||||| |||| | |||||||| |||| |||||    
T  55666844 aatttatttgcttaactaagtggaaaaatagtggtcacgaacattttagttc-gtgaccacgtttttcagcttataaataatggtcacgcaactgaaaaa 55666942  T
Q  159 acgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
      ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |||||| |||| ||||| ||||    
T  55666943 t-gtggtcacacagaccatatatttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaagggtggctac 55667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 19596891 - 19596680
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||| ||| ||||||||||||||||||||||||||  || |||| ||||||||||||||||||| ||| || |||||||||||||||||| | |    
T  19596891 tgaccactatgttttcagaatttatttggttaactaagtgggtaaatagtagtcatgcgcattttagttgcgtgaccacatttttcagcttctaaataat 19596792  T
Q  141 ggtcacgaaact--caaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtct 238  Q
    ||| ||  | ||   |||||| |||||||| | || |||||||||||| ||| || |||||  |||||||||||||||  |||||||||||  | |||||    
T  19596791 ggttacacagctgaaaaaaaatgtggtcacgctgaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagatgtct 19596692  T
Q  239 accgatctttat 250  Q
    | | ||||||||    
T  19596691 atcaatctttat 19596680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 1966833 - 1966979
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||| ||| || |||||||||||||||||| |||    
T  1966833 tgaccactagttttccagaatttatttggttaattaagtggaaaaatagtggtcacgcgca-tttagttgcgtgaccacatttttcagcttctaaatagt 1966931  T
Q  141 ggtcacgaaact-caaaaaacgtggtcacacagagcatatatttggtt 187  Q
    ||||||| ||||  |||||| ||||||||| |   |||||||||||||    
T  1966932 ggtcacgcaactaaaaaaaatgtggtcacatatgtcatatatttggtt 1966979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 62 - 251
Target Start/End: Complemental strand, 9810848 - 9810659
Alignment:
Q  62 ttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacg 161  Q
    |||||||||||||||| ||||||| ||| ||||| || ||||| ||||| ||| |  ||||||| |||||||||| |||||||||| |||| |||||| |    
T  9810848 ttatttggttaactaaatggaaaaatagaggtcacgcacatttgagttgcgtgactacattttttagcttctaaatagtggtcacgcaactgaaaaaatg 9810749  T
Q  162 tggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    |||| || || | |||||||||  ||||||||||||||  | ||||||||||| |  |||||| |||| ||||||| ||| |||||||||    
T  9810748 tggtaacgcaaaccatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatctttatt 9810659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 35544425 - 35544577
Alignment:
Q  46 actatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtca 145  Q
    ||||||| |||| ||||||||| ||||| ||||||||||| ||||| |||  |||| |||||||| ||| || |||||||||||||||||| ||||||||    
T  35544425 actatttatccaaaatttatttagttaattaagtggaaaaatagtgatcacacgca-tttagttgcgtgaccacatttttcagcttctaaatagtggtca 35544523  T
Q  146 cgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
       |||  |||||| ||| ||||||| | |||||||||| ||||||||||||||    
T  35544524 tacaacggaaaaaatgtgatcacacataccatatatttgattaactgaaatttt 35544577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 42908675 - 42908519
Alignment:
Q  43 accactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctca-tttttcagcttctaaacagtg 141  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||| |||  | || ||||||| ||| ||||  |||    
T  42908675 accactatttttccagaatttatttggttaactaagaggaaacatagtggtcacgcgcattttagttgcgtgatcacattttttcaacttttaaa-tgtg 42908577  T
Q  142 gtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttc 200  Q
    |||||  ||||  |||||  |||||| ||||| ||||||||||||| ||| ||||||||    
T  42908576 gtcacacaact-gaaaaatatggtcaaacagaccatatatttggttcactaaaattttc 42908519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 1966840 - 1966739
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |  |||| ||| || |||||||    
T  1966840 agtggtcacgcaact-aaaaaatgtggtcacacagaccatatatttggttaactgaaattttc-agagtggtacaaaagggtgtatacagtaagggtgtc 1966743  T
Q  238 tacc 241  Q
    ||||    
T  1966742 tacc 1966739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 14351171 - 14350999
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||  || ||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||  | ||| ||| |||||| ||| |||    
T  14351171 tgaccactattttgacaaaatttatttggttaactaagtggaaaaatagtggtcatggacattttagttgcgtgatcacatcttttagcttcaaaatagt 14351072  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaag 215  Q
    ||| | | || |   |||| |||  || ||| |   ||||||||||||||||||||||||||||||||| |||||    
T  14351071 ggttatgcaatt--gaaaatgtgaccatacaaattgtatatttggttaactgaaattttcgagagtggtgcaaag 14350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 24669270 - 24669363
Alignment:
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacaca 226  Q
    |||| |||||||||| |||| |||||| ||||||||||||| |||||||||| |||||| |||||||  |||||||||||||||  ||||||||    
T  24669270 taaatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 25007625 - 25007712
Alignment:
Q  164 gtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttattt 252  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||||  |||| |||||| | ||||||||| ||||||||||    
T  25007625 gtcacatagaccatatatttggttaactgaaattttcgagaatggtacaaagg-gtgtatacattaagagtgtctaccaatctttattt 25007712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 14351164 - 14351267
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| ||||  |||||  |||||||||| | ||||||||||||||||| || |||| ||||||||||||||| | || |||||||| |||||||    
T  14351164 agtggtcacgcaactagaaaaatatggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtc 14351263  T
Q  238 tacc 241  Q
    ||||    
T  14351264 tacc 14351267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 17633333 - 17633258
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||   |||||||||||| || |||||||||||    
T  17633333 aaaaaatgtggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacatta 17633258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 9810881 - 9810941
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||| ||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||    
T  9810881 aaaaaatgtggtcacacagaccatatatttggttaacttaaaatttctagagtggtacaaa 9810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 19596901 - 19596988
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||||| ||||||||||  | |||||||||||||||||||||||||| | |  |||||||| | |||||||||||| ||| |||||||    
T  19596901 aaaaaatgtggtcacacgtaccatatatttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggcgtctacc 19596988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 19746942 - 19747032
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||| || ||||||||  |||||||||||   ||||||||  |||||||||    
T  19746942 gtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttatt 19747032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 19792864 - 19792774
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||| || ||||||||  |||||||||||   ||||||||  |||||||||    
T  19792864 gtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctactaatctttatt 19792774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 5518819 - 5518758
Alignment:
Q  338 gaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctac 399  Q
    ||||||||||||||||||||| | || |||||||  || |||||||||||||||||||||||    
T  5518819 gaccggtcacaagaccactcaaacggttacacgtgtacaataatacgccgccttaaggctac 5518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 9809194 - 9809254
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||| ||||||||||||| |||||| |||||||||| ||| |||| |||||||||||||    
T  9809194 aaaaaatgtggtcacacagaccatatacttggttaacttaaaatttctagagtggtacaaa 9809254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 42908685 - 42908745
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||| ||||||||||| | ||||||||||||||||| |||||||  |||||||||||||    
T  42908685 aaaaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 24669274 - 24669081
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaac-----------agtggtcacga 148  Q
    ||||||||||||||||||||| |||| |||||||||  || |||||||||| ||| ||  |||||| || |||||||            ||||||||||     
T  24669274 atttatttggttaactaagtgaaaaaatagtggtcacacgaattttagttgcgtgaccatatttttgagtttctaaatgctgaaaaaatagtggtcacgc 24669175  T
Q  149 aactcaaaaaacgtggtcacacagagcat-atatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||| |||||| ||||||||||| | ||| |||||||| ||||| |||||||| ||| || |||||| | ||||||  | || |||||||||||    
T  24669174 aactgaaaaaatgtggtcacacataccataatatttggctaacttaaattttctagaatgatacaaatggatgtacgaaataagggtgtctacc 24669081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 492
Target Start/End: Original strand, 1638106 - 1638246
Alignment:
Q  353 cactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtgacaca-tggagcacacc 451  Q
    |||||||| ||||||||||  || |||||| | |||||||||||||||| ||||| ||| || |||||  |  |||||||||| ||||   |||||| ||    
T  1638106 cactcacacggctacacgtgtacaataatatgtcgccttaaggctacgtactcaaaggagcacgccaacatggctgcaccgtgccacaccagagcacgcc 1638205  T
Q  452 tcctcgcaaggatcacactgcacatgtccttctctgctcct 492  Q
    || | || |||||||| || ||| |||||||| | ||||||    
T  1638206 tcattgccaggatcacgctacacgtgtccttccccgctcct 1638246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 20874864 - 20874812
Alignment:
Q  119 catttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacaca 171  Q
    |||||||||||||||||| |||| ||||| |||| ||||||  ||||||||||    
T  20874864 catttttcagcttctaaaaagtgatcacgcaactgaaaaaatatggtcacaca 20874812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 30906044 - 30906261
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| |||||||||| |||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||| || ||||||||||| | |    
T  30906044 agttgtgtgaccactatgtttccataatttatttgcttaactaagtggaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcagcattt 30906143  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacggg 233  Q
    ||| ||||||||||||||| |||||  |||||||| |||| |||||||||||||||||||||||||  ||||||||||||| |  |||||||||||  ||    
T  30906144 aaatagtggtcacgaaactgaaaaatggtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaagg 30906243  T
Q  234 tgtctaccgatctttatt 251  Q
    ||| |||| |||||||||    
T  30906244 tgtgtacccatctttatt 30906261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 43900637 - 43900427
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||| | |||||||||||| ||| || |||||||||||||||||| |||    
T  43900637 tgacccctattttttcagaatttatttggttaactaaatagaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaaatagt 43900538  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||  |||| |||||| ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||   || |||||||||   |||||||     
T  43900537 ggtcacacaactgaaaaaatgtgatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtctat 43900438  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  43900437 caatctttatt 43900427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 45306068 - 45305881
Alignment:
Q  48 tatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacg 147  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||| || ||||||||||| |||||| ||||||||||||| ||||  |||||||||    
T  45306068 tatttttttagaatttattcggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtggccacatttttcagcttttaaa-tgtggtcacg 45305970  T
Q  148 aaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgt 236  Q
     |||| ||||||  |||||| |||||  ||||||||| ||||||||||||||  |||||||||||||||| |||||| |||| ||||||    
T  45305969 caactgaaaaaatatggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgt 45305881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 1400774 - 1400903
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| || |||||||||||||||||| |||    
T  1400774 tgaccactatttttccataatttatttggttaactaagtggaaaaatagtgatcacgcgcatttttgttgtgtgaccacatttttcagcttctaaatagt 1400873  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacaca 171  Q
    ||||||| ||||  ||||| |||||||||||    
T  1400874 ggtcacgcaact-gaaaaatgtggtcacaca 1400903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 1400781 - 1400678
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||| | |||||||||||||||||||||||||  ||| ||||||||| |  ||||||||||| |||||||    
T  1400781 agtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtc 1400682  T
Q  238 tacc 241  Q
    ||||    
T  1400681 tacc 1400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 28527330 - 28527228
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||||| |||||||||||||| ||||||||||  | |||||||||||||  |||||| |||| |||||||    
T  28527330 agtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtc 28527232  T
Q  238 tacc 241  Q
    ||||    
T  28527231 tacc 28527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 28527323 - 28527445
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||| ||||||  ||| |  |||||| |||||||||||   |    
T  28527323 tgaccactatttttccagaatttatttggttaactaattggaaaaatagtggtcacacgcatgttagtt-cgtgacaacattttccagcttctaaattat 28527421  T
Q  141 ggtcacgaaactcaaaaaacgtgg 164  Q
    ||||||| |||| |||||| ||||    
T  28527422 ggtcacgcaactaaaaaaatgtgg 28527445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 33667424 - 33667329
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||||| | || ||||||| ||| ||| || ||||||||| ||||||||    
T  33667424 tgaccactattttttcagaatatatttggttaactaagtggaaaaatagtggttacgcacattttaattgcgtgaccacatttttcaacttctaaa 33667329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 33667417 - 33667516
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||| ||| ||| | ||||||||||||||||| |||||||  ||||||||||||| || |||||| |||| |||||||    
T  33667417 agtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatattaagggtgtc 33667516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 41212424 - 41212507
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||  | |||| |||| |||||||    
T  41212424 aaaaaatgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 492
Target Start/End: Complemental strand, 29711335 - 29711179
Alignment:
Q  336 tggaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtg 435  Q
    ||||||||||||||||||| ||||||||||||| ||  | ||||||||||||||||||||||||   |||||| || || ||||| ||  ||||||||||    
T  29711335 tggaccggtcacaagaccattcacatggctacatgtgga-tataatacgccgccttaaggctactcactcaagagagcacgccaacttgtctgcaccgtg 29711237  T
Q  436 acaca-tggagcacacctcctcgcaaggatcacactgcacatgtccttctctgctcct 492  Q
     || |  ||||||  |||||||||| ||||||| || ||| | |||||| | ||||||    
T  29711236 ccatacaggagcatgcctcctcgcagggatcacgctacacgtatccttccccgctcct 29711179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 7378495 - 7378625
Alignment:
Q  67 tggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtc 166  Q
    ||||||| ||||||||| | |||||||||  | ||||||||||| ||  ||  |||||| ||||||||||  ||||| ||| |||| ||||||  |||||    
T  7378495 tggttaattaagtggaataatagtggtcacacacattttagttgcgtcaccatattttt-agcttctaaat-gtggttacgcaactgaaaaaatatggtc 7378592  T
Q  167 acacagagcatatatttggttaactgaaatttt 199  Q
    ||||| | ||||||||| |||||||||||||||    
T  7378593 acacaaaccatatattttgttaactgaaatttt 7378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 30906058 - 30905955
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||  |||| || ||| |||||||||||||  |||||| ||||||||| ||| |||  ||| || |||||||| |||||||||||| | |||||    
T  30906058 agtggtcacacaactaaataaatgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtc 30905959  T
Q  238 tacc 241  Q
    ||||    
T  30905958 tacc 30905955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 209 - 409
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| || || |||||||| ||| ||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||| |||    
T  209 tgaccactaatttttcaaaaattatttggataagtaagtggaaaaatagtggtcatgcgcattttagttgcgtgaccacatttttcagcttctaaatagt 308  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| |||| |||||  |||| |||||||| ||||||||||||||||||||| |||  ||||||||||||||  ||||||| |||| |||||| |||    
T  309 ggtcacgcaactgaaaaagtgtggccacacagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgtttac 408  T
Q  241 c 241  Q
    |    
T  409 c 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 216 - 124
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaa-ttttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||| ||| || ||| ||||||||  ||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||    
T  216 agtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacatta 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 7e-50; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 10304700 - 10304888
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| ||  ||||||| ||||||||| |||    
T  10304700 tgaccactttttttccagaatttatttggttaactaagtgaaaaaatagtggtcacgcgcattttagttgcgtgaccgtatttttctgcttctaaatagt 10304799  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    | ||||| |||| |||||| ||||||||||||| ||||||||| ||| ||| |||||||||||||| ||||  ||||||||||| ||||    
T  10304800 gatcacgcaactgaaaaaatgtggtcacacagaccatatatttagttcactaaaattttcgagagtagtacggaggaatgtacatatta 10304888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 3222541 - 3222332
Alignment:
Q  41 tgaccactat-ttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacag 139  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||| ||| || ||||||||||| | |||| ||    
T  3222541 tgaccactatattttccagaatttatttggttaactaagtggaaaaatagtggtcacgtacattttagttgcgtgaccgcatttttcagcatttaaatag 3222442  T
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    |||||||| |||| |||||| ||||||||| | | ||||||||||||||  |||||||||  |||||  ||||||||  ||||||||||| |||||||||    
T  3222441 tggtcacgcaactgaaaaaatgtggtcacagacaccatatatttggttatttgaaatttttaagagtaatacaaagg-gtgtacacattaagggtgtcta 3222343  T
Q  240 ccgatctttat 250  Q
     | ||||||||    
T  3222342 tcaatctttat 3222332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 22608469 - 22608260
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| ||||| ||||||| |||||||| |  |||| |||||||||||| |||||||||||  || || |||||||||||||||||| |||    
T  22608469 tgaccactaatttttcagaaattatttgattaactaattcaaaaaatagtggtcatgcacattttagttgcatgaccacatttttcagcttctaaatagt 22608370  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| ||||  ||||| || |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||||||| || | |||||    
T  22608369 ggtcacgcaact-gaaaaatgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaaggatatctac 22608271  T
Q  241 cgatctttatt 251  Q
    | || ||||||    
T  22608270 caatttttatt 22608260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 33815025 - 33815174
Alignment:
Q  50 tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaa 149  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||| || |||||||||||||||||| |||||||||| |    
T  33815025 ttttttcagaatttatttggttaactaagtggaaaaatggtggtcacgcgcattttagttgcgtgaccacatttttcagcttctaaatagtggtcacgca 33815124  T
Q  150 actcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    ||| |||||| |||||||||||||  |||||||| ||||| |||| ||||    
T  33815125 actgaaaaaatgtggtcacacagactatatatttagttaattgaagtttt 33815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 23595253 - 23595055
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| |||||| || |||           |||| || |||||||||||||||||| |||    
T  23595253 tgaccactaatttttcagaatttattttgttaactaagtggaaaaatagtggccacgcgt----------tgtgaccacatttttcagcttctaaatagt 23595164  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
     |||||  |||| ||||||  |||||||||||| ||||||||| ||||||| ||||||||||||||| |||||| |  |||||||||||  ||||||| |    
T  23595163 tgtcacacaactaaaaaaatatggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtctcc 23595064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 138715 - 138820
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||  || || |||||||| ||| || |||||||||||||||||| |||    
T  138715 tgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagt 138814  T
Q  141 ggtcac 146  Q
    ||||||    
T  138815 ggtcac 138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 146736 - 146841
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||  || || |||||||| ||| || |||||||||||||||||| |||    
T  146736 tgaccactattttttcagaatttatttggttgactaagtggaaaaatagtggtcgcgcacaatttagttgcgtgaccacatttttcagcttctaaatagt 146835  T
Q  141 ggtcac 146  Q
    ||||||    
T  146836 ggtcac 146841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 229
Target Start/End: Original strand, 3620761 - 3620947
Alignment:
Q  42 gaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtg 141  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||     ||||||||||||||  | ||||||||| |||||||| ||||    
T  3620761 gaccactattttttcagaatttatttggttaactaagtgaaaaaatagtggtcacatatattttagttgtgtgatcacatttttcaacttctaaatagtg 3620860  T
Q  142 gtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
     |||||  | |  ||||  ||  || |||||| || ||||||| ||||||||||||||||| | | ||||||||  ||||||||||||    
T  3620861 atcacgcga-ttgaaaattgtattcgcacagaccacatatttgattaactgaaattttcgaaaatagtacaaagcgatgtacacatta 3620947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 9068514 - 9068411
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||| ||||  ||| ||||||||||| |||||| || ||||||||||||| |||| |||    
T  9068514 tgaccactatttttccagaacttatttgttta-ctaagtggaaaaatagtaatcacgcgcattttagatgtgtgaccacatttttcagcttttaaatagt 9068416  T
Q  141 ggtca 145  Q
    |||||    
T  9068415 ggtca 9068411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 11108144 - 11108286
Alignment:
Q  109 tgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtgg 208  Q
    |||||| || ||||||||||||| |  |||||||||||| |||| |||||| ||||||||||| | ||||||||||||||| |||| ||||  ||| |      
T  11108144 tgtgtgaccacatttttcagcttattgacagtggtcacgcaactgaaaaaatgtggtcacacaaatcatatatttggttaattgaatttttttagaataa 11108243  T
Q  209 tacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||   || ||||||||| |||||||||| ||||||||||    
T  11108244 tacaaaaagatatacacattaagggtgtctactgatctttatt 11108286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 2430591 - 2430511
Alignment:
Q  162 tggtcacacagagcatatatttggttaactgaaattttcg-agagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||||||||||| ||||||||| |||||||||||||||   ||| |||||||||||||||||||||||| |||||||||||    
T  2430591 tggtcacacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 2430511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 24386336 - 24386424
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttta 249  Q
    ||||||||||||| ||||||||||||||||| |||||||  || |||||| ||||| |||||||||||| ||||||| ||| |||||||    
T  24386336 gtggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtcaacctatcttta 24386424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 2430607 - 2430661
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  2430607 tgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtca 2430661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 11108160 - 11108074
Alignment:
Q  155 aaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||  ||||| ||||||  |||||||||||||| | |||||||||    
T  11108160 aaaaatgtggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaagtgaatgtacacattaagagtgtctacc 11108074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 9068507 - 9068598
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||| |||||| ||||||||||| | |||||||||| |||||| |||||||  ||||||||||||| |  |||||||||||    
T  9068507 agtggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacatta 9068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 10304685 - 10304630
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagg 216  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  10304685 gtggtcacacagaccatatatttggttaactgaaattttttagagtggtacaaagg 10304630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 492
Target Start/End: Original strand, 27860725 - 27860876
Alignment:
Q  342 ggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtgacaca- 440  Q
    |||| |||||||||||||| || ||||| |  || |||||||||| ||||||| |||||  ||||||||| || ||||| || |||||||| || ||||     
T  27860725 ggtctcaagaccactcacacggttacacctggaccataatacgcctccttaagactacgcactcaagggaacacgccaagttgcctgcaccatgccacac 27860824  T
Q  441 tggagcacacctcctcgcaaggatcacactgcacatgtccttctctgctcct 492  Q
     ||||||||||||||||||| ||||||  | ||| |||||||| | ||||||    
T  27860825 aggagcacacctcctcgcaaagatcactatacacctgtccttccccgctcct 27860876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 2835078 - 2834976
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| | ||||||||||||||| ||||||||| |||| |||||||||||| || |||||| ||| ||||||||||  || ||  |||||||||||| |    
T  2835078 agttgtgtaaccactatttttccataatttatttagttagctaagtggaaaaataatggtcacgcgtattttagttgcatgaccatatttttcagctttt 2834979  T
Q  134 aaa 136  Q
    |||    
T  2834978 aaa 2834976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 13767189 - 13767125
Alignment:
Q  164 gtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatt 228  Q
    |||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||    
T  13767189 gtcagacagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatt 13767125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 20084665 - 20084578
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttt 248  Q
    ||||||||||| | ||||||||||||||||| |||||||  ||  ||||| ||||| |||||||||||| ||||||| ||| ||||||    
T  20084665 gtggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgtcaacctatcttt 20084578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 30056117 - 30056030
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||  ||||| |||||||||   ||| ||||||  ||||||||||    
T  30056117 aaaaaatgtggtcacatagaccatatatttggttaactgaaattttttagagttgtacaaaggggagtatacattaaaggtgtctacc 30056030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 3222534 - 3222624
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatt 228  Q
    |||||||||| ||||  ||||| ||||||||||||| |||||||||| |||||| |  ||||  |||||| |||||| |||||||||||||    
T  3222534 agtggtcacgtaactagaaaaatgtggtcacacagaccatatatttgattaactaatcttttttagagtgatacaaacgaatgtacacatt 3222624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 9068388 - 9068327
Alignment:
Q  155 aaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagg 216  Q
    ||||| ||||||| ||||| |||||| |||||||||||| |||||||||||||||| |||||    
T  9068388 aaaaatgtggtcatacagaccatatacttggttaactgatattttcgagagtggtataaagg 9068327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 2835075 - 2835167
Alignment:
Q  149 aactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||| |||||| |||||||||||||   ||||||||||||||| |||||||  |||||||||||||   || ||||||||| || ||||||||    
T  2835075 aactaaaaaaatgtggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggctgtctacc 2835167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 138722 - 138620
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| | |||| |||| |||||||| ||||||||||||||||| || ||||  ||||||||| ||| |||||| || |||| |||| ||    
T  138722 agtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaa-gaatgtgcatattaagggtatc 138624  T
Q  238 tacc 241  Q
    ||||    
T  138623 tacc 138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 146743 - 146641
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| | |||| |||| |||||||| ||||||||||||||||| || ||||  ||||||||| ||| |||||| || |||| |||| ||    
T  146743 agtggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaa-gaatgtgcatattaagggtatc 146645  T
Q  238 tacc 241  Q
    ||||    
T  146644 tacc 146641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 7915696 - 7915767
Alignment:
Q  139 gtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggta 210  Q
    ||||||||| |||| |||||  |||||||||||||  ||||||||| ||||||||||||||  |||||||||    
T  7915696 gtggtcacgcaactaaaaaattgtggtcacacagacgatatatttgattaactgaaatttttcagagtggta 7915767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 138813 - 138902
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||||||| | |||||||||||||||||||| ||||  ||||| |||||||||  ||||||||| |  |||||||||| || ||||||    
T  138813 gtggtcacacaca-catatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctaccaatatttatt 138902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 146834 - 146923
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||||||| | |||||||||||||||||||| ||||  ||||| |||||||||  ||||||||| |  |||||||||| || ||||||    
T  146834 gtggtcacacaca-catatatttggttaactgaatttttttagagtagtacaaaggggtgtacacatcaatggtgtctaccaatatttatt 146923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 7706919 - 7706865
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    |||| ||||||||||||||| |||||||||||  ||||||||||| |||||||||    
T  7706919 tgacaactatttttccagaacttatttggttacttaagtggaaaaatagtggtca 7706865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 9474718 - 9474543
Alignment:
Q  61 tttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaac 160  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||| ||  ||| || ||||||| ||||||||       |||||| |||| ||||||     
T  9474718 tttatttggttaactaagtgaaaaaatagtggtcacacgcatttta-tttcgtgaccacattttttagcttcta-------gtcacgcaactgaaaaaat 9474627  T
Q  161 gtg--gtcacacagagcatatatttggttaactgaaa-ttttcgagagtggtacaaaggaatgtacacattacgggtgtctacc 241  Q
    |||  |||| | ||| |||||| || | ||||||||| ||||| ||||||||||||| | ||||| |||||| | |||||||||    
T  9474626 gtggtgtcatatagatcatatagttagctaactgaaatttttcaagagtggtacaaaaggatgtatacattaagagtgtctacc 9474543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 397
Target Start/End: Complemental strand, 16343899 - 16343838
Alignment:
Q  336 tggaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggct 397  Q
    |||||||||||||||||||||| || || ||||||| |||||| |||| || ||||||||||    
T  16343899 tggaccggtcacaagaccactcccacggttacacgtgaactatgatacaccaccttaaggct 16343838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2430654 - 2430706
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaac 190  Q
    |||||||||| |||| |||||| ||||||||||| | ||||||||||||||||    
T  2430654 agtggtcacgcaactgaaaaaatgtggtcacacaaaccatatatttggttaac 2430706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 2365649 - 2365704
Alignment:
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaa 195  Q
    |||||||| |||| |||||| |||||||| || | |||||||||||||||||||||    
T  2365649 tggtcacgcaactgaaaaaatgtggtcacgcataccatatatttggttaactgaaa 2365704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 7706872 - 7706757
Alignment:
Q  138 agtggtcacgaaactcaaaaaac-gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgt 236  Q
    |||||||||| |||| ||||||  ||||||||||| | ||||||||   |||||| |||||||  ||| ||||||||| | ||||||||||||  |||||    
T  7706872 agtggtcacgcaactgaaaaaaatgtggtcacacaaaccatatattatattaactaaaatttttcagaatggtacaaaaggatgtacacattaaaggtgt 7706773  T
Q  237 ctaccgatctttattt 252  Q
     || | ||||||||||    
T  7706772 ttatcaatctttattt 7706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 7915683 - 7915596
Alignment:
Q  165 tcacacagagcatatatttggttaactgaaattttcg-agagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    ||||||| | || ||||||| ||||||||||||||   |||||| |||||| |  |||||||||||  ||||||||||||||||||||    
T  7915683 tcacacataccacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaaaggtgtctaccgatctttatt 7915596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 18980407 - 18980357
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtg 91  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||| |||||    
T  18980407 tgaccactattattcttgaatttatttggttaactaagtgtaaaagtagtg 18980357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 23595259 - 23595345
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    |||||| |||||||||||||  |||||||||||||| |||||||||  |||||  |||||| |  |||||| |||| || |||||||    
T  23595259 aaaaaatgtggtcacacagactatatatttggttaattgaaattttttagagtaatacaaaagggtgtacatattaaggttgtctac 23595345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 24386266 - 24386316
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtg 91  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||| |||||    
T  24386266 tgaccactattattcttgaatttatttggttaactaagtgaaaaagtagtg 24386316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 13312707 - 13312498
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||| | || |||||||||||||| ||| || |||||||||||||||||| ||     
T  13312707 tgaccactatttttccataatttatttggttaactaagtggaaaaatagttgccacgcgcattttagttgcgtgaccacatttttcagcttctaaatagc 13312608  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||  ||||  ||||| ||| ||||| ||| ||||||||||||||| |||||||||||| | | ||||||| |  |||||||||||  ||| |||||    
T  13312607 ggtcacccaact-gaaaaatgtgttcacatagaccatatatttggttaattgaaattttcgaaaatagtacaaaagggtgtacacattaaaggtatctac 13312509  T
Q  241 cgatctttatt 251  Q
    | |||||||||    
T  13312508 caatctttatt 13312498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 33958980 - 33959189
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |  || |||||||||| ||| ||  ||||||||| ||||||| |||    
T  33958980 tgaccacaatttttccagaatttatttggtcaactaagtggaaaaatagtggttactcggattttagttgcgtgaccatatttttcagtttctaaatagt 33959079  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| | || |||||| ||  ||||| |||  |||||||| |||||||||| ||||||||| ||||| |||||||| ||||||||| ||||||||||    
T  33959080 ggtcacgcagctgaaaaaatgtaatcacataga-tatatattttgttaactgaagttttcgagaatggtataaaggaatatacacattaagggtgtctac 33959178  T
Q  241 cgatctttatt 251  Q
      |||||||||    
T  33959179 taatctttatt 33959189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 35922841 - 35922718
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| || |||||||||||||||||| |||    
T  35922841 tgaccactattttttcagaatttatttggttaactaaatggaaaaatagtggtcatacgcattttagttgcgtgaccacatttttcagcttctaaatagt 35922742  T
Q  141 ggtcacgaaactcaaaaaacgtgg 164  Q
    ||||||| |||| |||||| ||||    
T  35922741 ggtcacgcaactgaaaaaatgtgg 35922718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 22169566 - 22169361
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||| ||||||| || |||||||||||||||||| || ||||| ||||||||| |||||||||||||| ||| || ||||||||| ||| |||| |||    
T  22169566 tgaccattattttttcaaaatttatttggttaactacgttgaaaaatagtggtcacgcgcattttagttgcgtgaccacatttttcaacttataaatagt 22169467  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctac 240  Q
    ||||||| |||| |||||| ||| ||||| |   ||||||||| |||||||||||||||| | | || |||||  |  ||||||||||| ||||||||||    
T  22169466 ggtcacgcaactgaaaaaatgtgatcacatattccatatatttagttaactgaaattttcaaaaatgatacaatagggtgtacacattaagggtgtctac 22169367  T
Q  241 cgatct 246  Q
    | ||||    
T  22169366 caatct 22169361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 43461694 - 43461910
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| |||| ||||||||| |||||||||||||||| ||||||||||||| ||||||| | | | |||||||||| ||| ||  |||||||| |||||    
T  43461694 agttgtgtgacaactattttttcagaatttatttggtttactaagtggaaaaatagtggttacgtgaattttagttgcgtgaccgtatttttcaacttct 43461793  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacggg 233  Q
    ||| |||||||||  |||| ||||||  ||||| || ||| |||||||||| ||||||||||||||| | |||| ||||||||  |  |||||||| | |    
T  43461794 aaatagtggtcacacaactgaaaaaatatggtc-caaagaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagag 43461892  T
Q  234 tgtctaccgatctttatt 251  Q
    |||||||| |||||||||    
T  43461893 tgtctacctatctttatt 43461910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 19621477 - 19621656
Alignment:
Q  45 cactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct----aaacagt 140  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||| || | ||||     ||||    ||| |||    
T  19621477 cactatttttccagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacgtttt-----ttctggaaaaatagt 19621571  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacac 225  Q
    ||||||| || |  ||||| ||||||||||| | |||||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  19621572 ggtcacgcaaatggaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaaggagtgtacac 19621656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 38521968 - 38522115
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||| || ||||| ||||||||||| |||||||||||| |||| ||||||||| |||||||||| | | ||| || |||||||||||||||||| |||    
T  38521968 tgaccattagttttctagaatttatttagttaactaagtgtaaaaatagtggtcacgcgcatttta-tcgcgtgaccacatttttcagcttctaaatagt 38522066  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaa 189  Q
    ||||| | || | |||||| ||||||||| ||| |||||||||||||||    
T  38522067 ggtcatgcaattgaaaaaatgtggtcacatagaccatatatttggttaa 38522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 42034865 - 42034771
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaa 135  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||| || |||||||||||||||||    
T  42034865 tgaccactagttttccaaaatttatttggttaactaagtggaaaaatagtggtcacgtgcattttagttgcgtgaccacatttttcagcttctaa 42034771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 43262708 - 43262910
Alignment:
Q  63 tatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttc---agcttctaaac-----------agtggtcacga 148  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||   ||||| ||||            ||| |||||      
T  43262708 tatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgtgaccacatttttcttcagcttttaaatgttggaaaaatagtagtcacat 43262807  T
Q  149 aactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttt 248  Q
    |||| || ||| ||||||||||||| |||||||||||||||||||||||||  | ||| |||||||||  ||||||||||| ||||||||||  ||||||    
T  43262808 aactaaacaaatgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctacttatcttt 43262907  T
Q  249 att 251  Q
    |||    
T  43262908 att 43262910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 31189681 - 31189475
Alignment:
Q  46 actatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtca 145  Q
    ||||| ||||||||||||||||| ||||| |||||||||| |||||||||    ||||||||||| |||  | |||||||||||||||||| |||  |||    
T  31189681 actatgtttccagaatttatttgattaaccaagtggaaaa-tagtggtcacaaacattttagttgcgtgatcacatttttcagcttctaaatagtaatca 31189583  T
Q  146 cgaaactcaa--aaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccga 243  Q
     | || |  |  |||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||    |||||| ||||  ||||||| || |    
T  31189582 tgcaattggacaaaaatgtggtcacacatactatatatttggttaactgaaattttcgagagtggtacaaaatgttgtacatattaaaggtgtctgccaa 31189483  T
Q  244 tctttatt 251  Q
    ||||||||    
T  31189482 tctttatt 31189475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 35922704 - 35922607
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    |||||| ||||||||||| | |||||||||| ||||||||||||||  |||||| |||||||| |||||||||||| | |||||||||||||||||||    
T  35922704 aaaaaatgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctaccgatctttatt 35922607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 36169394 - 36169501
Alignment:
Q  102 ttttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcg 201  Q
    ||||||||| ||| ||  ||||||||||||||||| |||||||||| |||| ||| || ||||||||||| | |||||||||| | | |||||||||| |    
T  36169394 ttttagttgcgtgaccatatttttcagcttctaaatagtggtcacgcaactgaaagaatgtggtcacacataccatatatttgatcagctgaaatttttg 36169493  T
Q  202 agagtggt 209  Q
    ||||||||    
T  36169494 agagtggt 36169501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 13312700 - 13312799
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||| | ||||||| |||||||||||||||||  |||||||||||    || |||||||||| |||||||    
T  13312700 agtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtaca----aaagtacacattaagggtgtc 13312795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 30704398 - 30704463
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcattttt 125  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||| | || |||||||    
T  30704398 atttatttggttaactaagtggaaaaatagtggtcacgcgcattttagttgtgcgaccacattttt 30704463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 15221682 - 15221766
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtct 238  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||  ||| || ||||||||| |||||||||||  |||||||    
T  15221682 aaaaaatgtggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaaggtgtct 15221766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 16095587 - 16095512
Alignment:
Q  176 atatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatt 251  Q
    |||||||||||||| |||||||||||||||||||| |||||  |||||||||||   ||||||||| || ||||||    
T  16095587 atatatttggttaattgaaattttcgagagtggtagaaaggggtgtacacattaaatgtgtctacctatatttatt 16095512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 33958971 - 33958873
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatctttatttt 253  Q
    |||||| ||| | ||| ||| ||||||||||||||| |||||||||  ||||||||||||||| || |||| |||| ||||||||||| ||| |||||||    
T  33958971 aaaaaatgtgattacatagaccatatatttggttaagtgaaatttttcagagtggtacaaagg-atatacatattaagggtgtctacctatcattatttt 33958873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 42034858 - 42034949
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||| |||||| ||| | ||||| | |||||||||| | ||||||||||||  ||||||||||||||| |||||| |||||    
T  42034858 agtggtcacgcaactaaaaaaatgtgattacacataccatatatttgatcaactgaaattttttagagtggtacaaagggatgtacgcatta 42034949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 2477360 - 2477302
Alignment:
Q  44 ccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcat 102  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||| || ||||||    
T  2477360 ccactatttttacagaatttatttggttaactaagtcgaaaaatagtggccacgcgcat 2477302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 15221625 - 15221571
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaag 215  Q
    ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||    
T  15221625 gtggtcacacaaaccatatatttggttaactaaaattttcgagaatggtacaaag 15221571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 36169410 - 36169310
Alignment:
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    |||||||| |||| |||||| ||||||||||  | ||||||||||||||||| |||||||  | ||||||||||||  | |||||||||| | |||||||    
T  36169410 tggtcacgcaact-aaaaaatgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtcta 36169312  T
Q  240 cc 241  Q
    ||    
T  36169311 cc 36169310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 22169561 - 22169637
Alignment:
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagg 216  Q
    |||||||| |||| |||||| ||||||||||| | |||| |||||||||||| ||| |||  |||||||||||||||    
T  22169561 tggtcacgcaactaaaaaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtggtacaaagg 22169637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 30045964 - 30045888
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttg 110  Q
    |||||| |||||| ||||||  | |||||||||||||||| ||| ||||||| ||||||||| ||| ||||||||||    
T  30045964 agttgtgtgaccattattttcaccgaatttatttggttaattaaatggaaaaatagtggtcacgcgtattttagttg 30045888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 15221678 - 15221619
Alignment:
Q  36 ttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    |||| |||||||||||||| |||||||||||| ||||| |||||||||||  ||||||||    
T  15221678 ttgtgtgaccactattttttcagaatttatttagttaattaagtggaaaaagagtggtca 15221619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 30704402 - 30704321
Alignment:
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||| |||| ||||| |||| || |||||| |||||  ||| |||||||||| ||||||||||||||  |||||||||||||    
T  30704402 taaatagtgatcacgcaactaaataaacgtagtcacggagaccatatatttgattaactgaaattttacagagtggtacaaa 30704321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 7156182 - 7156106
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||| ||||||||||| || |||||| ||  |||||||||| | |  | ||||||||||||||||||    
T  7156182 atttatttggttaattaagtggaaaaataatggtcacgcatattttagttgcgcgatcacatttttcagcttctaaa 7156106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 7156055 - 7156001
Alignment:
Q  175 catatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| ||||||||||||||| | |||||||||||   ||||||||||||    
T  7156055 catatatttgattaactgaaattttctaaagtggtacaaaaagatgtacacatta 7156001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 31189712 - 31189762
Alignment:
Q  175 catatatttggttaactgaaattttcgagagtggtacaaaggaatgtacac 225  Q
    |||||||||||||||||||||||||  | |||||||||||||  |||||||    
T  31189712 catatatttggttaactgaaattttttaaagtggtacaaaggggtgtacac 31189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 252
Target Start/End: Original strand, 10617 - 10826
Alignment:
Q  43 accactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtgg 142  Q
    |||| |||||||  ||||||||||||||||||||||||||||| || |||||| | | |||||||||| ||| || ||||||| |  || |||| |||||    
T  10617 accattattttttgagaatttatttggttaactaagtggaaaaataatggtcacgggtattttagttgcgtgaccacattttttattttttaaatagtgg 10716  T
Q  143 tcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccg 242  Q
    ||| | |||| ||||||  | |||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| || ||| ||||     
T  10717 tcatgcaacttaaaaaatatagtcacctagaccatatatttggttaattgaaattttctagagtggtacaaaggaatgtacatattaaggatgtttacct 10816  T
Q  243 atctttattt 252  Q
    ||||||||||    
T  10817 atctttattt 10826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 41 - 234
Target Start/End: Original strand, 29677085 - 29677267
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||| || |||||||||||||||||| |||    
T  29677085 tgaccactattttttcagaatttatttggttaactaagtggaaaaatagtggtcacgcacattttagttgcgtgaccacatttttcagcttctaaatagt 29677184  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggt 234  Q
    ||||||  |||| |||||       |||||    |||||||||| |||||| ||||||| |||||||||||||||   ||||||||||| ||||    
T  29677185 ggtcactcaactgaaaaa-------cacac----catatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaagggt 29677267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 34364347 - 34364132
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||| |||| | ||||||| |  ||||||||||||||| || ||| |||||||||||    
T  34364347 agttgtgtgaccattatttttccagaatttttttggttaactaagtgaaaaaattgtggtcacgttcattttagttgtgtgaccacatgtttcagcttct 34364248  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacggg 233  Q
    ||| | ||| |||| ||||  |||||  |||||||||||| ||||||||| ||||||| |||||||| |||||||||||||   |||| || ||||  ||    
T  34364247 aaata-tggccacgcaact-gaaaaatatggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaatagatgtgcatattaatgg 34364150  T
Q  234 tgtctaccgatctttatt 251  Q
    |||| ||| |||||||||    
T  34364149 tgtcaacctatctttatt 34364132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 34490297 - 34490098
Alignment:
Q  41 tgaccacta-tttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacag 139  Q
    ||||||||| ||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||| |||  || || ||||||| |||||||||| ||    
T  34490297 tgaccactagttttttcagaatttatttggttaactaactagaaaaatagtggtcatgcgcatttta-ttgcatgaccacattttttagcttctaaatag 34490199  T
Q  140 tggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    ||||||   |||| |||||| || |||||||||| ||||||||| |||||||||||||||  | |||||||| ||   || ||||||||| |||||||||    
T  34490198 tggtcatacaactgaaaaaatgt-gtcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtcta 34490100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 38952016 - 38951840
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctca--tttttcagcttctaaaca 138  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||  ||||||||||||| ||| |   |  |||||||| ||||||| |    
T  38952016 tgaccactatttctccaaaatttatttggttaactaagtagaaaaatagtggtcagacgcattttagttgcgtgactatatttttttcagtttctaaata 38951917  T
Q  139 gtggtcacgaaact-caaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    ||||||||| | ||  |||||| |||||  || ||| ||||||||||||||||| ||||||||||||||||||||||    
T  38951916 gtggtcacgcagctgaaaaaaatgtggtttcatagaccatatatttggttaacttaaattttcgagagtggtacaaa 38951840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 29167803 - 29167941
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    ||||| |||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||  |||||| |||||||    
T  29167803 agttgcctgaccactagtttttcggaatttatttggttaactaagtggaaaaatagtggtcatgcgcatttta-ttgcgtgaccatattttttagcttct 29167901  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacacaga 173  Q
    ||| |||||||||| |||| |||||| ||| | |||||||    
T  29167902 aaatagtggtcacgcaactgaaaaaatgtgattacacaga 29167941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 42604334 - 42604197
Alignment:
Q  34 agttgtctgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttct 133  Q
    |||||| ||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| || ||  | |||| |||||||    
T  42604334 agttgtgtgatcactattttttcagaatttatttcgttaactaagtggaaaaatagtggtcacgcgcattttagttgtatgaccatacttttaagcttct 42604235  T
Q  134 aaacagtggtcacgaaactcaaaaaacgtggtcacaca 171  Q
    ||| |||||| | | |||| |||||| |||||||||||    
T  42604234 aaatagtggtgatgcaactgaaaaaatgtggtcacaca 42604197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 338 - 483
Target Start/End: Complemental strand, 25408414 - 25408268
Alignment:
Q  338 gaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtgac 437  Q
    ||||||||||||||||||||||| |  |||||||  |||||||||||||||| ||||||||||| || |||||| || ||||  || ||||||||||| |    
T  25408414 gaccggtcacaagaccactcacacgattacacgtggactataatacgccgccctaaggctacgtacttaagggagcacgccagcttgcctgcaccgtgcc 25408315  T
Q  438 aca-tggagcacacctcctcgcaaggatcacactgcacatgtccttc 483  Q
    |||  ||||||| |||||||||||||||||  || ||||||||||||    
T  25408314 acagaggagcacgcctcctcgcaaggatcatgctacacatgtccttc 25408268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 13350984 - 13350879
Alignment:
Q  149 aactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtctaccgatcttt 248  Q
    |||| |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||| || |||    
T  13350984 aactgaaaaaacgtgatcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtctacctattttt 13350885  T
Q  249 attttt 254  Q
     |||||    
T  13350884 tttttt 13350879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 25238585 - 25238436
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    |||| |||| |||| |||||||||||||||||||||||||||||| ||||||| | || ||||||| ||  ||| || ||||||| |||||||||| |||    
T  25238585 tgactactagtttttcagaatttatttggttaactaagtggaaaaatagtggttacgcacatttta-ttacgtgaccacattttttagcttctaaatagt 25238487  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaact 191  Q
    ||||||| |||| ||||||  || ||| | ||| ||||||||| |||||||    
T  25238486 ggtcacgcaactgaaaaaatttgatcatatagaccatatatttagttaact 25238436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 34490290 - 34490393
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| |||||| ||||||||||||| ||||||||| || ||||||||||||  ||||||||||||||   ||||||||||| | |||||    
T  34490290 agtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtc 34490389  T
Q  238 tacc 241  Q
    ||||    
T  34490390 tacc 34490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 5831641 - 5831483
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||  | | ||  |||||| | |||||||| |||    
T  5831641 tgaccactaattttccagaatttatttggttaactaagtggaaaaattgtggtaatacgcattttagttacgggaccatattttttaacttctaaatagt 5831542  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    ||||| | |||  | ||||  || ||||||| | ||||| ||| ||||||| |||||||    
T  5831541 ggtcatgcaacaaacaaaatatgatcacacataccatatctttagttaactaaaatttt 5831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 2570017 - 2569963
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtca 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  2570017 tgaccactatttttctagaatttatttggttaactaagtggaaaaatagtggtca 2569963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 517433 - 517623
Alignment:
Q  61 tttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaaac 160  Q
    |||||||||||||||||||  |||| |||| ||||||  ||||||||||| |||  |  |||||| | |||||||| |||||| ||| || | |||||      
T  517433 tttatttggttaactaagttaaaaaatagtagtcatgttcattttagttgcgtgatcatattttttaacttctaaatagtggttacgcaattgaaaaat- 517531  T
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaagga---atgtacacattacgggtgtctaccgatcttta 249  Q
    |||||  |||| | ||||||||||||||||| ||||||| ||||||| ||||||  |   |||||||||||| || |||||| |||||||||    
T  517532 gtggttgcacatatcatatatttggttaacttaaatttttgagagtgatacaaataaatgatgtacacattaaggatgtctatcgatcttta 517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 5831634 - 5831734
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtc 237  Q
    |||||||||| |||| ||||||  |||||||||||| ||||||||||||||| |||||||||  |||||| ||||||||  ||||||| |||  ||||||    
T  5831634 agtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtgtc 5831733  T
Q  238 t 238  Q
    |    
T  5831734 t 5831734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 5855117 - 5855006
Alignment:
Q  139 gtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtct 238  Q
    ||||||||  |||| |||| | ||||||||||||| |||||||||||||| ||||||||||  | ||| ||||||||| ||||| |||||| | ||||||    
T  5855117 gtggtcacacaactgaaaatatgtggtcacacagaccatatatttggttagctgaaatttttca-agtagtacaaagggatgtaaacattaagcgtgtct 5855019  T
Q  239 accgatctttatt 251  Q
    ||| |||||||||    
T  5855018 acctatctttatt 5855006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 5855201 - 5855309
Alignment:
Q  133 taaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgg 232  Q
    |||| |||||||||| |||| |  ||| ||||||||||| | ||||||||||||||||| |||||||  ||||||||||||| || |||||| ||||  |    
T  5855201 taaatagtggtcacgcaactaactaaatgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatattagtg 5855300  T
Q  233 gtgtctacc 241  Q
    |||||||||    
T  5855301 gtgtctacc 5855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 9468199 - 9468064
Alignment:
Q  60 atttatttggttaactaagtgg-aaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagtggtcacgaaactcaaaaa 158  Q
    |||||||||||||||||||||| |||| |||| ||||    |||||||||||||||  | |||||| |||||| |||| | ||||||   |||| |||||    
T  9468199 atttatttggttaactaagtggcaaaaatagtagtcacatacattttagttgtgtgatcacattttacagcttttaaata-tggtcagacaactgaaaaa 9468101  T
Q  159 acgtggtcacacagagcatatatttggttaactgaaa 195  Q
    |  |||||||||| | |||||||||||||||||||||    
T  9468100 atatggtcacacataccatatatttggttaactgaaa 9468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 2570010 - 2570100
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    |||||||||| |||||||||||  |||| ||||| | |||||| |||||||||| |||||||| |||| ||||||||||  |||||||||||    
T  2570010 agtggtcacgcaactcaaaaaatatggtaacacaaaccatatacttggttaacttaaattttccagagcggtacaaagg-gtgtacacatta 2570100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 2996101 - 2996026
Alignment:
Q  61 tttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||||||| |||||| ||| || || |||||||||| ||| ||| || ||||||||||||||||||    
T  2996101 tttatttggttaactaagcggaaaaatagcggccacgcgcattttatttgcgtgaccacatttttcagcttctaaa 2996026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 29677077 - 29676992
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtcta 239  Q
    |||||| ||||||||||||  ||||||||||||||||| |||||||  | |||| |||||||| | ||||||||||  ||||||||    
T  29677077 aaaaaatgtggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaaggtgtcta 29676992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 13351010 - 13351078
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacacatta 229  Q
    ||||||||| ||| ||||||||||||||| | |||||||  |||||||||||||||  |||||||||||    
T  13351010 gtggtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacatta 13351078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 38244803 - 38244863
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattt 198  Q
    |||||||||| |||| |||||| ||||||||||||| ||||||||||| ||||| ||||||    
T  38244803 agtggtcacgcaactgaaaaaatgtggtcacacagaccatatatttggctaacttaaattt 38244863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 9929874 - 9929988
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtac-aaaggaatgtacacattacgggtgt 236  Q
    |||||||||| || | |||||| ||||||||||||| ||||||||| ||||| |||||||||  | | |||||| |||  ||||| ||||||| | ||||    
T  9929874 agtggtcacgcaaatgaaaaaatgtggtcacacagaccatatatttagttaattgaaatttttcaaaatggtacaaaaaaaatgtgcacattaagagtgt 9929973  T
Q  237 ctaccgatctttatt 251  Q
    | ||| |||||||||    
T  9929974 caacctatctttatt 9929988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 34364361 - 34364419
Alignment:
Q  167 acacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaatgtacac 225  Q
    |||||||||||||||||| |||||| |||||||  ||||| ||||||||| ||||||||    
T  34364361 acacagagcatatatttgattaacttaaatttttcagagtagtacaaagggatgtacac 34364419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 9929715 - 9929662
Alignment:
Q  161 gtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    ||||||| ||| | ||||||||||||||||| |||||||| |||||||||||||    
T  9929715 gtggtcatacaaaccatatatttggttaacttaaattttcaagagtggtacaaa 9929662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 25238589 - 25238653
Alignment:
Q  149 aactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaa 213  Q
    |||| |||||| ||||||||| | | |||||||||| ||||||||||||||  ||||||||||||    
T  25238589 aactaaaaaaatgtggtcacagaaaccatatatttgattaactgaaatttttcagagtggtacaa 25238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 48637859 - 48637796
Alignment:
Q  336 tggaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctac 399  Q
    ||||||||||||||||| ||||||| ||||| |  |  || |||||||||||||||||||||||    
T  48637859 tggaccggtcacaagacgactcacacggctaaatatgtacaataatacgccgccttaaggctac 48637796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 34941762 - 34941712
Alignment:
Q  188 aactgaaattttcgagagtggtacaaaggaatgtacacattacgggtgtct 238  Q
    ||||||||||||  ||||||||||||||| |||||||||||| || |||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtct 34941712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 29167802 - 29167757
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaatttt 199  Q
    |||||| ||||||||||| | ||||||||| |||||||||||||||    
T  29167802 aaaaaatgtggtcacacaaaccatatatttagttaactgaaatttt 29167757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 28499644 - 28499704
Alignment:
Q  154 aaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaa 214  Q
    |||||| |||||||  | || |||||||||||||||||||||||||  ||| |||||||||    
T  28499644 aaaaaatgtggtcatccggaccatatatttggttaactgaaattttttagaatggtacaaa 28499704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 21558 - 21688
Alignment:
Q  119 catttttcagcttctaaacagtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattttcgagagtggtacaaaggaa 218  Q
    |||||||||||||||| | |||||||||| |||| |||||| ||||||||||||| |||||||| |||||||||| |||||| | ||||| ||||| |      
T  21558 catttttcagcttctatatagtggtcacgcaactgaaaaaatgtggtcacacagaccatatattcggttaactgagattttctaaagtggcacaaacg-- 21655  T
Q  219 tgtacacattacgggtgtctaccgatctttatt 251  Q
    |||||||||||  |||||||||| |||||||||    
T  21656 tgtacacattaaaggtgtctaccaatctttatt 21688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 24021 - 24180
Alignment:
Q  41 tgaccactatttttccagaatttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaacagt 140  Q
    ||||||||| |||| ||||||||||||||| || ||||||||||| ||||||||| ||||||||||  || ||  || ||||||| |||||||||| |||    
T  24021 tgaccactagtttttcagaatttatttggtaaaataagtggaaaaatagtggtcacgcgcatttta-atgcgtaaccacattttttagcttctaaatagt 24119  T
Q  141 ggtcacgaaactcaaaaaacgtggtcacacaga--gcatatatttggttaactgaaatttt 199  Q
    ||||| | |||| |||||| || |||||| |||   |||||||| |||| |||||||||||    
T  24120 ggtcatgcaactgaaaaaatgtagtcacatagacgacatatattcggttcactgaaatttt 24180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 87112 - 87036
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||||||||||||||| ||||| ||||||||| | | |||||||||| ||| || |||||||||| |||||||    
T  87112 atttatttggttaactaagtagaaaaatagtggtcacgtgtattttagttgcgtgaccacatttttcagtttctaaa 87036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 112235 - 112159
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttgtgtggcctcatttttcagcttctaaa 136  Q
    |||||||| ||||||||||||||||| ||||||||| | |||||||| ||| ||| || | ||||||||||||||||    
T  112235 atttatttagttaactaagtggaaaaatagtggtcacgtgcattttaattgcgtgaccacgtttttcagcttctaaa 112159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 479
Target Start/End: Complemental strand, 41099 - 40972
Alignment:
Q  353 cactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtgacaca-tggagcacacc 451  Q
    |||||||| || ||||||   ||||| ||||||| ||||||||||||   ||||||||| || ||||| |||||||||||||| | ||   |||||| ||    
T  41099 cactcacacggttacacgcggactattatacgcctccttaaggctacacactcaagggagcacgccaactttcctgcaccgtgccgcacaagagcacgcc 41000  T
Q  452 tcctcgcaaggatcacactgcacatgtc 479  Q
    |||||||| ||||||| || ||||||||    
T  40999 tcctcgcagggatcacgctacacatgtc 40972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 485
Target Start/End: Original strand, 4223 - 4374
Alignment:
Q  335 ctggaccggtcacaagaccactcacatggctacacgttaactataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgt 434  Q
    |||||||||||||||||||||||||||  |  |||||  || |||||||| ||||||||||||||   ||||||||| || ||||| || ||| || |||    
T  4223 ctggaccggtcacaagaccactcacataacaccacgtgtacaataatacgtcgccttaaggctacacactcaagggagcacgccaacttacctacatcgt 4322  T
Q  435 gacaca-tggagcacacctcctcgcaaggatcacactgcacatgtccttctc 485  Q
    | ||||  ||||||| |||||| ||  ||||||| || ||| | ||||||||    
T  4323 gccacacaggagcacgcctccttgctgggatcacgctacacgtttccttctc 4374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 5947 - 5897
Alignment:
Q  60 atttatttggttaactaagtggaaaactagtggtcatgcgcattttagttg 110  Q
    |||||||||||||| |||||| |||| ||||||||| ||| ||||||||||    
T  5947 atttatttggttaattaagtgcaaaaatagtggtcacgcgtattttagttg 5897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 24935 - 24995
Alignment:
Q  138 agtggtcacgaaactcaaaaaacgtggtcacacagagcatatatttggttaactgaaattt 198  Q
    |||||||||  |||| |||| | |||||||||||||  |||||||||| ||||||||||||    
T  24935 agtggtcacacaactgaaaacatgtggtcacacagactatatatttggctaactgaaattt 24995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 10733 - 10769
Alignment:
Q  335 ctggaccggtcacaagaccactcacatggctacacgt 371  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  10733 ctggaccggtcacaagaccattcacacggctacacgt 10769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 21427 - 21521
Alignment:
Q  374 actataatacgccgccttaaggctacgtgctcaagggatcatgccaattttcctgcaccgtg--acacatggagcacacctcctcgcaaggatcac 467  Q
    ||||||||||||||||||||||||||   || |||||| || ||||| || | |||| ||||  |||||| |||||| |||||||||| |||||||    
T  21427 actataatacgccgccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacat-gagcacgcctcctcgcagggatcac 21521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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