View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_1 (Length: 818)
Name: NF18928_low_1
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 13 - 805
Target Start/End: Original strand, 29058960 - 29059752
Alignment:
| Q |
13 |
tcatcatagaatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgcatcaagcagttttc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29058960 |
tcatcatagaatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgcgtcaagcagttttc |
29059059 |
T |
|
| Q |
113 |
gatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgccaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059060 |
gatctcgaccgttcaatctcaaattaacagccgagatcatttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgccaata |
29059159 |
T |
|
| Q |
213 |
tcctttactgcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacattcttgtactaggat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059160 |
tcctttactgcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacattcttgtactaggat |
29059259 |
T |
|
| Q |
313 |
catactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatccnnnnnnnaaacatgt |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
29059260 |
catactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatgtagcatcctttttttaaacatgt |
29059359 |
T |
|
| Q |
413 |
ttctttgacggttttatcttgccacaggttttggtatgcgccatttggaaaaaggtttctgcctaagaaatgtactgtcacatttgtttcaggttctaca |
512 |
Q |
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| T |
29059360 |
tgctttgacggttttatcttgccacaggttttggtatgcgccatttggaaaaaggtttctgtctaagaaatgtactgtcacatttgtttcaggttctaca |
29059459 |
T |
|
| Q |
513 |
catttgttatcactgacacggttggatcctccttttccacataatatgtcatagaagcttggttgttcagataagcctgaagtttctgcatgtttcacca |
612 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059460 |
catttgttatcactgacacggttggatcctccttttccacataatatgtcatagaagcttggttgttcagataagcctgaagtttctgcatgtttcacca |
29059559 |
T |
|
| Q |
613 |
ctttatctatggctgcaattgtttgattatcagaatgagcataatagaagccagagttcaaacgtctaggtaggtttattggtcctgcataaatgaaaca |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059560 |
ctttatctatggctgcaattgtttgattatcagaatgagcataatagaagccagagttcaaacgtctaggtaggtttattggtcctgcataaatgaaaca |
29059659 |
T |
|
| Q |
713 |
attgcaaaacaatcattgtagaaaggaaccaaaagagcagaaaatttccttgcagattatttgaatttattctatgacatagcacttattttt |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
29059660 |
attgcaaaacaatcattgtagaaaggaaccaaaagagaagaaaatttccttacagattatttgaatttgttctatgacatagcacttattttt |
29059752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 33554223 - 33554296
Alignment:
| Q |
69 |
tttgggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacag |
142 |
Q |
| |
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|||||||||||||||||||||||||| || ||| ||||||||||||||| || || | ||||||||||||||| |
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| T |
33554223 |
tttgggatttggatttggtgcagtaattgtgtcacgcagttttcgatctcaactgtccgatctcaaattaacag |
33554296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 23713590 - 23713459
Alignment:
| Q |
73 |
ggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaat |
172 |
Q |
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|||||||||||| ||||||||||| ||||| | ||||||| | ||| || |||||||||||| ||||||| ||||||| ||| ||||||||||||||| | |
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| T |
23713590 |
ggatttggattttgtgcagtaactacatcacgtagttttcaacctcaacagttcaatctcaagttaacagtcgagatctttttaaactgattttgttatt |
23713491 |
T |
|
| Q |
173 |
gcgtaatataaaccgtccgatctcagattaac |
204 |
Q |
| |
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| ||||| | ||| |||| ||||||||||||| |
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| T |
23713490 |
gtgtaatctgaactgtccaatctcagattaac |
23713459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 2244040 - 2243944
Alignment:
| Q |
301 |
ttgtactaggatcatactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatcc |
397 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||| |||||| || |||||| ||||||||||| ||||||||||| || ||||| |
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| T |
2244040 |
ttgtgctaggatcatactcccgtaagcctgacaaaacttggcgcgcaagtttattaagcctttgactgatccaatagttgtgaataatgtaacatcc |
2243944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 33151630 - 33151782
Alignment:
| Q |
73 |
ggatttggatttggtgcagtaactgcatcaagcagtttt-cgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaa |
171 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | ||||| ||||||| ||| |||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
33151630 |
ggatttagatttggtgcattaactgcatcacacggtttttcgatctcaaccacctgatcttaaattaatgtccgagatcgtttaaaactga-tttgttat |
33151728 |
T |
|
| Q |
172 |
tgcgtaatataaaccgtccgatctcagattaactgccaatatcctttactgcat |
225 |
Q |
| |
|
|| ||||| |||||| |||||| ||| || ||| ||||||||| ||||| |||| |
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| T |
33151729 |
tgtgtaatttaaaccctccgatttcatatgaacggccaatatcatttaccgcat |
33151782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 50488178 - 50488240
Alignment:
| Q |
126 |
caatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgt |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| || || ||||| |||||||| |
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|
| T |
50488178 |
caatctcaaattaacagtcgagatcgtttaaaattgattttggtattgtgtaatgtaaaccgt |
50488240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 20770183 - 20770276
Alignment:
| Q |
104 |
gcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctca |
197 |
Q |
| |
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|||||||| ||||| ||||||| ||||||||||||| | |||||| |||| || |||||||||||| || ||||| | || |||||||||||| |
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| T |
20770183 |
gcagttttgcatctcaaccgttcgatctcaaattaacggacgagattgtttcaagctgattttgttattgggtaatctgaatcgtccgatctca |
20770276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 25552053 - 25552150
Alignment:
| Q |
81 |
atttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaat |
179 |
Q |
| |
|
||||||||||||| ||| ||| |||| |||| ||||| ||||| | ||||||||||||||| |||||| |||| ||||||||||| || |||||||| |
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|
| T |
25552053 |
atttggtgcagtatttgcgtcatgcagatttcaatctcaaccgtccgatctcaaattaacagtcgagatagttt-aaactgattttaatattgcgtaat |
25552150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 32854797 - 32854908
Alignment:
| Q |
110 |
ttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgcca |
209 |
Q |
| |
|
||||||||| ||| | | || ||||||||||||| |||||||||| || || |||||| || || | ||||||| | ||| |||||||||||||| | || |
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| T |
32854797 |
ttcgatctcaaccatccgatatcaaattaacagctgagatcgtttgaagctaattttgatattgtgaaatataagctgtcagatctcagattaacggtca |
32854896 |
T |
|
| Q |
210 |
atatcctttact |
221 |
Q |
| |
|
| ||| |||||| |
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|
| T |
32854897 |
agatcgtttact |
32854908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 17940313 - 17940223
Alignment:
| Q |
79 |
ggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgtt |
169 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| ||||| |||| |||||| ||||||| | ||||| ||| |||||||| ||||| |
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| T |
17940313 |
ggatttggtgcagtaactgcgtcacgcagttttcaatctcatccgtgtgatctcagattaacaatcaagatccttttaaactgatcttgtt |
17940223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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