View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18928_low_11 (Length: 430)

Name: NF18928_low_11
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18928_low_11
NF18928_low_11
[»] chr4 (32 HSPs)
chr4 (1-314)||(54264729-54265037)
chr4 (209-312)||(49039433-49039536)
chr4 (360-418)||(54265086-54265144)
chr4 (209-323)||(41492475-41492589)
chr4 (209-312)||(20610743-20610846)
chr4 (210-312)||(21023340-21023441)
chr4 (209-295)||(29785154-29785240)
chr4 (209-312)||(54854167-54854270)
chr4 (215-312)||(37997834-37997931)
chr4 (209-289)||(48512202-48512283)
chr4 (268-312)||(33359880-33359924)
chr4 (210-312)||(12585547-12585649)
chr4 (209-295)||(49319397-49319483)
chr4 (254-295)||(8998382-8998423)
chr4 (256-323)||(4153225-4153293)
chr4 (209-289)||(20753136-20753216)
chr4 (256-312)||(35230283-35230339)
chr4 (268-312)||(42758152-42758196)
chr4 (256-312)||(47416519-47416575)
chr4 (212-295)||(20166323-20166406)
chr4 (209-295)||(4419691-4419777)
chr4 (256-310)||(24039935-24039989)
chr4 (209-286)||(53815699-53815777)
chr4 (256-289)||(21765420-21765453)
chr4 (230-295)||(30203278-30203343)
chr4 (209-289)||(36008278-36008359)
chr4 (216-312)||(6481572-6481668)
chr4 (257-289)||(32885740-32885772)
chr4 (256-312)||(33076581-33076636)
chr4 (231-314)||(34773671-34773752)
chr4 (256-284)||(46734985-46735013)
chr4 (209-289)||(47017957-47018037)
[»] chr1 (49 HSPs)
chr1 (209-312)||(16182813-16182916)
chr1 (209-323)||(18003820-18003934)
chr1 (209-312)||(3341724-3341827)
chr1 (209-308)||(9768801-9768900)
chr1 (209-312)||(9769568-9769671)
chr1 (229-323)||(2903003-2903098)
chr1 (209-312)||(43020615-43020718)
chr1 (229-312)||(50199464-50199547)
chr1 (227-312)||(35424162-35424247)
chr1 (209-309)||(1721144-1721244)
chr1 (213-312)||(12553201-12553301)
chr1 (221-306)||(8904270-8904355)
chr1 (267-312)||(41677122-41677167)
chr1 (212-312)||(195051-195151)
chr1 (209-295)||(7015691-7015778)
chr1 (211-301)||(50575907-50575997)
chr1 (209-306)||(4605837-4605933)
chr1 (267-312)||(9976372-9976417)
chr1 (267-312)||(19866537-19866582)
chr1 (232-289)||(42831974-42832031)
chr1 (257-310)||(48260179-48260232)
chr1 (209-309)||(11238019-11238119)
chr1 (256-312)||(33844668-33844724)
chr1 (256-312)||(33949254-33949310)
chr1 (209-301)||(52961081-52961173)
chr1 (229-312)||(7906314-7906397)
chr1 (269-308)||(27654997-27655036)
chr1 (256-323)||(30049834-30049900)
chr1 (231-289)||(39434644-39434702)
chr1 (209-295)||(5684126-5684211)
chr1 (209-295)||(24168584-24168670)
chr1 (210-280)||(42801884-42801954)
chr1 (209-251)||(47645845-47645887)
chr1 (262-312)||(48565135-48565185)
chr1 (231-312)||(50859357-50859436)
chr1 (258-295)||(1576126-1576163)
chr1 (210-251)||(5862133-5862174)
chr1 (229-306)||(25270155-25270232)
chr1 (256-289)||(34560349-34560382)
chr1 (256-312)||(37262094-37262151)
chr1 (234-307)||(50501871-50501944)
chr1 (209-245)||(4146338-4146374)
chr1 (209-289)||(4354116-4354196)
chr1 (256-312)||(13941370-13941426)
chr1 (209-285)||(19536721-19536796)
chr1 (214-278)||(23336511-23336575)
chr1 (256-312)||(23750201-23750257)
chr1 (261-289)||(29451352-29451380)
chr1 (257-289)||(39433410-39433442)
[»] chr6 (33 HSPs)
chr6 (209-323)||(34524879-34524993)
chr6 (209-312)||(26669647-26669750)
chr6 (209-312)||(22730689-22730793)
chr6 (235-310)||(7233995-7234070)
chr6 (209-289)||(5134445-5134526)
chr6 (209-312)||(8309168-8309272)
chr6 (209-310)||(30833021-30833122)
chr6 (211-296)||(29430307-29430388)
chr6 (229-312)||(6455477-6455560)
chr6 (209-295)||(10455746-10455833)
chr6 (229-312)||(19680236-19680319)
chr6 (229-295)||(8253596-8253661)
chr6 (234-310)||(2970218-2970292)
chr6 (215-312)||(4844153-4844250)
chr6 (256-289)||(6530215-6530248)
chr6 (231-312)||(9051279-9051360)
chr6 (256-289)||(26528618-26528651)
chr6 (209-312)||(9422837-9422941)
chr6 (209-312)||(14949007-14949111)
chr6 (216-312)||(24256927-24257023)
chr6 (209-289)||(25020539-25020619)
chr6 (209-283)||(2945599-2945674)
chr6 (235-306)||(13094490-13094561)
chr6 (231-289)||(9491746-9491804)
chr6 (268-306)||(20149973-20150011)
chr6 (268-306)||(22182821-22182859)
chr6 (256-289)||(7563587-7563620)
chr6 (276-312)||(1395578-1395614)
chr6 (262-310)||(10828360-10828408)
chr6 (268-296)||(17305580-17305608)
chr6 (256-296)||(17347305-17347345)
chr6 (229-293)||(17751344-17751408)
chr6 (257-289)||(19279501-19279533)
[»] scaffold0119 (1 HSPs)
scaffold0119 (209-312)||(1043-1146)
[»] chr8 (31 HSPs)
chr8 (209-312)||(220350-220453)
chr8 (209-312)||(689505-689608)
chr8 (209-312)||(733973-734076)
chr8 (209-312)||(857869-857972)
chr8 (209-301)||(216146-216238)
chr8 (209-301)||(692706-692798)
chr8 (209-301)||(696915-697007)
chr8 (209-301)||(729769-729861)
chr8 (209-301)||(853664-853756)
chr8 (209-312)||(24572839-24572942)
chr8 (209-295)||(39432333-39432419)
chr8 (256-309)||(35779804-35779857)
chr8 (209-312)||(10970270-10970371)
chr8 (256-312)||(25470834-25470890)
chr8 (260-312)||(39208857-39208909)
chr8 (269-312)||(6325333-6325376)
chr8 (209-312)||(14011026-14011129)
chr8 (231-289)||(7649555-7649612)
chr8 (209-286)||(10292355-10292433)
chr8 (256-294)||(17467328-17467366)
chr8 (256-317)||(26900470-26900529)
chr8 (231-289)||(34073250-34073308)
chr8 (211-312)||(11900572-11900672)
chr8 (209-310)||(12560036-12560136)
chr8 (256-289)||(33570440-33570473)
chr8 (210-306)||(43554454-43554551)
chr8 (256-312)||(4604341-4604397)
chr8 (209-289)||(15042376-15042456)
chr8 (270-306)||(18546143-18546179)
chr8 (209-296)||(26657860-26657948)
chr8 (209-289)||(43468716-43468796)
[»] chr7 (29 HSPs)
chr7 (209-312)||(7392294-7392397)
chr7 (209-312)||(35498402-35498504)
chr7 (209-312)||(43635592-43635695)
chr7 (209-312)||(1649156-1649259)
chr7 (256-312)||(26734259-26734315)
chr7 (209-296)||(21877676-21877762)
chr7 (209-296)||(35195847-35195934)
chr7 (216-294)||(1513498-1513576)
chr7 (210-312)||(10020457-10020559)
chr7 (270-323)||(44409265-44409319)
chr7 (231-289)||(45011669-45011727)
chr7 (209-289)||(21285364-21285445)
chr7 (208-293)||(24427366-24427451)
chr7 (256-289)||(37129370-37129403)
chr7 (209-281)||(7465470-7465542)
chr7 (256-312)||(10958084-10958140)
chr7 (228-312)||(24579274-24579358)
chr7 (209-289)||(36315985-36316065)
chr7 (209-296)||(23470505-23470591)
chr7 (231-286)||(25711145-25711200)
chr7 (229-296)||(5773153-5773222)
chr7 (231-289)||(29658283-29658341)
chr7 (231-312)||(2567820-2567901)
chr7 (210-295)||(16814702-16814787)
chr7 (229-306)||(42181471-42181548)
chr7 (229-289)||(11808062-11808122)
chr7 (209-289)||(27047726-27047806)
chr7 (209-301)||(37917396-37917488)
chr7 (256-312)||(43712301-43712357)
[»] chr5 (20 HSPs)
chr5 (229-295)||(31907675-31907741)
chr5 (215-295)||(17557040-17557119)
chr5 (224-312)||(40384270-40384358)
chr5 (209-296)||(10106634-10106721)
chr5 (209-312)||(11246482-11246585)
chr5 (209-312)||(35813231-35813333)
chr5 (228-312)||(39684261-39684345)
chr5 (229-312)||(28537159-28537242)
chr5 (257-312)||(31556870-31556925)
chr5 (262-312)||(37986855-37986905)
chr5 (209-314)||(33599913-33600018)
chr5 (209-285)||(6614053-6614129)
chr5 (209-312)||(3535924-3536027)
chr5 (270-312)||(22687869-22687911)
chr5 (267-309)||(27006402-27006444)
chr5 (209-295)||(40250182-40250268)
chr5 (265-314)||(20699413-20699461)
chr5 (267-308)||(42260712-42260753)
chr5 (256-308)||(22396980-22397032)
chr5 (268-312)||(38129001-38129045)
[»] chr2 (30 HSPs)
chr2 (212-309)||(32288383-32288480)
chr2 (256-312)||(1244620-1244676)
chr2 (221-312)||(10602021-10602113)
chr2 (209-312)||(5029088-5029191)
chr2 (209-312)||(41305054-41305157)
chr2 (268-306)||(29896155-29896193)
chr2 (209-312)||(580773-580874)
chr2 (256-312)||(12206549-12206605)
chr2 (229-289)||(19064903-19064963)
chr2 (256-292)||(37912480-37912516)
chr2 (231-294)||(9520834-9520897)
chr2 (209-312)||(18089733-18089836)
chr2 (231-309)||(18386805-18386881)
chr2 (269-312)||(34107338-34107381)
chr2 (229-312)||(37516014-37516097)
chr2 (209-312)||(39334869-39334972)
chr2 (231-289)||(3037633-3037691)
chr2 (209-295)||(18065258-18065344)
chr2 (269-311)||(22355147-22355189)
chr2 (231-289)||(32943365-32943423)
chr2 (256-305)||(36190105-36190155)
chr2 (256-289)||(34018081-34018114)
chr2 (216-301)||(35694779-35694863)
chr2 (265-306)||(36386108-36386149)
chr2 (229-310)||(36413784-36413865)
chr2 (216-301)||(42211531-42211616)
chr2 (209-289)||(8234803-8234883)
chr2 (229-289)||(18054989-18055049)
chr2 (256-312)||(29713077-29713133)
chr2 (211-251)||(44132612-44132652)
[»] scaffold0054 (1 HSPs)
scaffold0054 (209-312)||(67165-67268)
[»] chr3 (32 HSPs)
chr3 (209-312)||(40160739-40160842)
chr3 (209-295)||(19137623-19137709)
chr3 (209-295)||(28951870-28951956)
chr3 (229-310)||(2903732-2903813)
chr3 (209-294)||(31917873-31917958)
chr3 (209-312)||(21248978-21249080)
chr3 (225-296)||(22432915-22432986)
chr3 (209-312)||(24130563-24130666)
chr3 (209-312)||(31680736-31680838)
chr3 (215-310)||(34407080-34407175)
chr3 (209-311)||(24160517-24160619)
chr3 (209-295)||(33533207-33533293)
chr3 (229-306)||(4045628-4045705)
chr3 (228-293)||(11668276-11668341)
chr3 (256-309)||(32080106-32080159)
chr3 (231-312)||(50724393-50724472)
chr3 (231-312)||(50788376-50788455)
chr3 (209-289)||(33206761-33206841)
chr3 (267-306)||(17262281-17262320)
chr3 (209-296)||(31108764-31108851)
chr3 (267-306)||(42665919-42665958)
chr3 (229-312)||(49299228-49299310)
chr3 (239-301)||(16119880-16119941)
chr3 (209-289)||(41767779-41767860)
chr3 (209-312)||(47191376-47191478)
chr3 (209-290)||(49639032-49639113)
chr3 (256-289)||(53467999-53468032)
chr3 (262-310)||(6951781-6951829)
chr3 (209-277)||(16874213-16874281)
chr3 (229-281)||(24890097-24890149)
chr3 (221-289)||(40996882-40996950)
chr3 (267-311)||(51017851-51017895)
[»] scaffold0002 (2 HSPs)
scaffold0002 (211-312)||(440405-440506)
scaffold0002 (231-312)||(451365-451444)
[»] scaffold0009 (1 HSPs)
scaffold0009 (210-286)||(108375-108452)
[»] scaffold0129 (1 HSPs)
scaffold0129 (231-312)||(7082-7163)
[»] scaffold0036 (1 HSPs)
scaffold0036 (209-285)||(25029-25106)
[»] scaffold0011 (1 HSPs)
scaffold0011 (229-306)||(19389-19466)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 54264729 - 54265037
Alignment:
Q  1 attgttatttgttaaatggttttttcgctattaggtaatctaggtaacccactacaatgagtcaaagaaaggtaaccaactgcaaccattaggattctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54264729 attgttatttgttaaatggttttttcgctattaggtaatctaggtaacccactacaatgagtcaaagaaaggtaaccaactgcaaccattaggattctgt 54264828  T
Q  101 ttacaaaggagccatggtttgcttgccaaaatagtgaagaatgactaattaatggatgttatttttgggtgataattaaatgcataagtgtgtagtcccg 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54264829 ttacaaaggagccatcgtttgcttgccaaaatagtgaagaatgactaattaatggatgttatttttgggtgataattaaatgcataagtgtatagtcccg 54264928  T
Q  201 tgagctatgcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatga 300  Q
    |||     |||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||| ||||| |||||||||||||||||||||||||    
T  54264929 tga-----gcatagctcagctggcagaaacatgcattgttatatgtaggggtcagggttcaaacctcgaacacctcacttattcaccttgaaaaagatga 54265023  T
Q  301 actctagccactgg 314  Q
    | ||||||||||||    
T  54265024 attctagccactgg 54265037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 49039536 - 49039433
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || | ||  ||||| |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  49039536 gcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagc 49039437  T
Q  309 cact 312  Q
    ||||    
T  49039436 cact 49039433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 54265086 - 54265144
Alignment:
Q  360 tgtgtatattgtttctatgtaaggttatcggtctaggcaagtagttattgagtgatgtg 418  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  54265086 tgtgtatattgtttctatgtaaggttatcggtttaggcaagtagttattgagtggtgtg 54265144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 41492589 - 41492475
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||| ||||||| || |||   ||||| ||||| |||||||||||||||| |||||||||||| |||| ||||||    
T  41492589 gcatagctcagttggcagggacatgcattattatatgcaggggccggggttcgaacct-ggacaccccacttatttaccttgaaaaaggtgaattctagc 41492491  T
Q  309 cact-ggttacttgac 323  Q
    |||| |||||||||||    
T  41492490 cactaggttacttgac 41492475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 20610743 - 20610846
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || |||   ||||| |||  |||||| |||||||||||||||| |||||| |||| ||||||    
T  20610743 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaattctagc 20610842  T
Q  309 cact 312  Q
    ||||    
T  20610843 cact 20610846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 21023441 - 21023340
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    |||||||||| ||||||||||||||||||||||||   | || |  ||||| |||| | |||||||||||||||||||||||||||| |||| |||| ||    
T  21023441 catagctcagttggcagaaacatgcattgttatatccgg-ggttggggttcgaacccccgacaccccacttattcaccttgaaaaaggtgaattctaacc 21023343  T
Q  310 act 312  Q
    |||    
T  21023342 act 21023340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 29785154 - 29785240
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| ||||||  |||| || ||| |||||||| ||||  ||||| |||| |||||||||||||||||||||||||||||    
T  29785154 gcatagctcagttggcagggacatacactgtaatatgtaggggctggggttcgaaccccggacaccccacttattcaccttgaaaaa 29785240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 54854270 - 54854167
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||  ||||||| || ||||  ||||| |||| |||||| | ||||||||||||||||||||  |||| ||||||    
T  54854270 gcatagctcagttggcagggacatgcataattatatgcaggggctggggttcgaaccccggacatcacacttattcaccttgaaaaaagtgaattctagc 54854171  T
Q  309 cact 312  Q
    ||||    
T  54854170 cact 54854167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 37997931 - 37997834
Alignment:
Q  215 ctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| ||||||  |||| |||||||||||| || | ||  ||||| |||| | ||||||||||||||||||||| |||| |||||| ||||||||||    
T  37997931 ctcagttggcagggacattcattgttatatgcagggtctggggttcgaaccccagacaccccacttattcaccttaaaaaggatgaattctagccact 37997834  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 48512202 - 48512283
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||||||  ||| |||||||||||||| || ||||| |||||  ||| |||||||||||||||||||||||    
T  48512202 gcatagctcagttggcagggacaatgcattgttatatgcaggggctagggttcgtaccccggacaccccacttattcacctt 48512283  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 33359880 - 33359924
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33359880 ggacaccccacttattcaccttgaaaaaggtgaattctagccact 33359924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 12585649 - 12585547
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    |||| ||||| ||||||  |||||||||||||||||||  |||    |||| |||| || ||||| |||||||||| |||||||||| |||| |||||||    
T  12585649 cataactcagttggcagggacatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaattctagcc 12585550  T
Q  310 act 312  Q
    |||    
T  12585549 act 12585547  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 49319397 - 49319483
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| |||||   ||||||||| ||||||| || ||    ||||| |||| |||||||||||||||||||||||||||||    
T  49319397 gcatagctcagttggcatggacatgcattattatatgcaggggtcggggttccaaccccggacaccccacttattcaccttgaaaaa 49319483  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 8998423 - 8998382
Alignment:
Q  254 atggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  8998423 atggttcaaacctcggacacccaacttattcaccttaaaaaa 8998382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 4153225 - 4153293
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact-ggttacttgac 323  Q
    |||||||||| |  ||||| ||||||||||||||||||||||| || | |||||||| |||||||||||    
T  4153225 ggttcaaaccccaaacacctcacttattcaccttgaaaaagataaattatagccactaggttacttgac 4153293  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 20753216 - 20753136
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || || ||||||| |||||||||| |||   ||||| |||| |||||||| ||||||||||||||    
T  20753216 gcatagctcagttggtaggaaaatgcattattatatgtaggggccggggttcgaaccccggacaccacacttattcacctt 20753136  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 35230339 - 35230283
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||||||||||||||||||||| ||||||||| || |||| | ||||||||    
T  35230339 ggttcgaacctcggacaccccacttatttaccttgaaataggtgaattttagccact 35230283  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 42758196 - 42758152
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  42758196 ggacaccccacttattcaccttcaaaaagatgaattatagccact 42758152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 47416519 - 47416575
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| || |||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  47416519 ggttcgaatctcggacaccccacttattcactttgaaaaaggtgaattctaaccact 47416575  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 20166323 - 20166406
Alignment:
Q  212 tagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    |||||||| ||||||  ||||||||||||||||| || |||   ||||| |||| | || ||||||||||||| ||||||||||    
T  20166323 tagctcagttggcagggacatgcattgttatatgcaggggccgaggttcgaaccccagataccccacttattctccttgaaaaa 20166406  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 4419777 - 4419691
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||| ||||| || |||| ||||||||||||||||| || |||   ||||||||||  | ||||| || |||||||||||||||||    
T  4419777 gcataactcagttgtcagagacatgcattgttatatgcaggggccggggttcaaacccagaacacctcatttattcaccttgaaaaa 4419691  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 24039935 - 24039989
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||| |||| || ||||| ||||||||||||||||||||| |||| ||||||||    
T  24039935 ggttcgaaccccgaacacctcacttattcaccttgaaaaaggtgaattctagcca 24039989  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 53815699 - 53815777
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcac 286  Q
    ||||||||||| ||||||  ||| |||||| ||||||| || ||||  ||||| |||| ||||||||||||||||||||    
T  53815699 gcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcac 53815777  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 21765453 - 21765420
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  21765453 ggttcgaacctcggacaccccacttattcacctt 21765420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 30203278 - 30203343
Alignment:
Q  230 catgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    |||||||||||||||| ||||||   ||||| |||| |||| || ||||||||||| |||||||||    
T  30203278 catgcattgttatatgcagaggccggggttcgaaccccggatactccacttattcatcttgaaaaa 30203343  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 36008278 - 36008359
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||||||  ||| |||||||||||||| || |||   ||||| |||| || ||||||||||||||||||||    
T  36008278 gcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaaccccgaacaccccacttattcacctt 36008359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 6481668 - 6481572
Alignment:
Q  216 tcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| ||||||  ||||||||  ||||||| ||||||   ||||| |||||| ||| ||||||||||||||||| |||| | |||| ||||| ||||    
T  6481668 tcagttggcagggacatgcatgattatatgcagaggccgaggttcgaacctcagacgccccacttattcaccttaaaaatggtgaattctagtcact 6481572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 32885740 - 32885772
Alignment:
Q  257 gttcaaacctcggacaccccacttattcacctt 289  Q
    |||| ||||||||||||||||||||||||||||    
T  32885740 gttcgaacctcggacaccccacttattcacctt 32885772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 33076581 - 33076636
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| ||||||||| ||||||||||||| ||||||||||| | ||||||||    
T  33076581 ggttcgaaccccggacaccctacttattcacctt-aaaaagatgaattatagccact 33076636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 34773752 - 34773671
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccactgg 314  Q
    ||||||| ||||||| || ||||  ||||| |||| |||||||||||||||||||| ||  | ||| |||| ||||||||||||    
T  34773752 atgcattattatatgcaggggctgaggttcgaaccccggacaccccacttattcacttt--ataaggtgaattctagccactgg 34773671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 46735013 - 46734985
Alignment:
Q  256 ggttcaaacctcggacaccccacttattc 284  Q
    |||||||||||||||||||||||||||||    
T  46735013 ggttcaaacctcggacaccccacttattc 46734985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 47018037 - 47017957
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  47018037 gcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcacctt 47017957  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 16182813 - 16182916
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||| ||||||||| |||||||||| ||||  |||||||||| ||||||||||||||||||| ||||||||| ||||| |||| |    
T  16182813 gcatagctcagttggcagagacatgcattattatatgtaggggctggggttcaaaccccggacaccccacttattcatcttgaaaaatatgaattctaac 16182912  T
Q  309 cact 312  Q
    ||||    
T  16182913 cact 16182916  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 18003820 - 18003934
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || |||   ||||| | || || ||||||||||||||||||| ||||||| |||| ||||||    
T  18003820 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaattctagc 18003919  T
Q  309 cactggttacttgac 323  Q
    |||||| ||||||||    
T  18003920 cactggctacttgac 18003934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 3341827 - 3341724
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||| ||||||| || |||   || || |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  3341827 gcatagctcagttggcagggacatgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagc 3341728  T
Q  309 cact 312  Q
    ||||    
T  3341727 cact 3341724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 9768900 - 9768801
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || ||    ||||| |||| |||||||||||||||||||||||||||||| |||| ||||||    
T  9768900 gcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagc 9768801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 9769671 - 9769568
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||| |||||||||| |  |  ||||| |||| |||||||||||||||||||||||||||||| |||| |||| |    
T  9769671 gcatagctcagttggcagggacatgcattattatatgtagggattggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctaac 9769572  T
Q  309 cact 312  Q
    ||||    
T  9769571 cact 9769568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 2903098 - 2903003
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact-ggttacttgac 323  Q
    ||||||||||||||||| |||||    ||||| |||| || |||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  2903098 acatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaattctagccactaggttacttgac 2903003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 43020615 - 43020718
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||| | ||||||  ||||||||| ||||||| || || |  ||||| |||||||||||||||||| |||||||||||||||  |||| ||||||    
T  43020615 gcatagctcggttggcagggacatgcattattatatgcaggggttggggttcgaacctcggacaccccactcattcaccttgaaaaatgtgaattctagc 43020714  T
Q  309 cact 312  Q
    ||||    
T  43020715 cact 43020718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 50199547 - 50199464
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||| || |||   ||||| |||| |||||||||||||||||||||||||||||| | || ||||||||||    
T  50199547 acatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaattctagccact 50199464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 35424162 - 35424247
Alignment:
Q  227 aaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||| |  ||||  | ||| |||| |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  35424162 aaacatgcattgttatatgcatgggctgagattcgaaccccggataccccatttattcaccttgaaaaagatgaattctagccact 35424247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 1721144 - 1721244
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| || |||||||||||||||||| || |||   | ||| |||| |||||||| |||||||||||||| |||||| |||| ||||||    
T  1721144 gcatagctcagttggtaggaacatgcattgttatatgcaggggccgggtttcgaaccccggacacctcacttattcaccttaaaaaaggtgaattctagc 1721243  T
Q  309 c 309  Q
    |    
T  1721244 c 1721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 12553201 - 12553301
Alignment:
Q  213 agctcagctggcagaaacatgcattgttatatgtagagg-ctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccac 311  Q
    ||||||| ||| || |||||||||||||||||| || || |   ||||| |||| |||||||||||||||||||| ||||||||| |||| |||||||||    
T  12553201 agctcagttggtaggaacatgcattgttatatgcaggggccgggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaattctagccac 12553300  T
Q  312 t 312  Q
    |    
T  12553301 t 12553301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 8904270 - 8904355
Alignment:
Q  221 tggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||||||| || ||| || ||||||||||    ||||||||||||||||  ||||||||| |||| ||||    
T  8904270 tggcagaaacatgcattgttatatatataggttaaggttcaaacccataacaccccacttattcattttgaaaaaggtgaattcta 8904355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 41677122 - 41677167
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  41677122 cggacaccccacttattcaccttgaaaaaggtgaattctagccact 41677167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 195051 - 195151
Alignment:
Q  212 tagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccac 311  Q
    |||||||| ||||||  ||||||||  ||||||| || ||||  |||||  ||| | |||||||||||||||||||||||||||| |||| |||| ||||    
T  195051 tagctcagttggcagggacatgcataattatatgcaggggctgaggttcgtaccccagacaccccacttattcaccttgaaaaaggtgaattctaaccac 195150  T
Q  312 t 312  Q
    |    
T  195151 t 195151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 7015778 - 7015691
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccactt-attcaccttgaaaaa 295  Q
    ||||||||||| |||| |  |||||||||||||||||||| ||||  ||||| |||  || ||||||||||| |||||||||||||||    
T  7015778 gcatagctcagttggctgggacatgcattgttatatgtaggggctgaggttcgaactccgaacaccccacttaattcaccttgaaaaa 7015691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 50575907 - 50575997
Alignment:
Q  211 atagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||| ||| ||  ||||||||||||||||| |  ||||  ||||| |||||| |||||| |||||||||||||| |||||| ||||    
T  50575907 atagctcagttggaagggacatgcattgttatatgcaagggctggggttcgaacctcagacacctcacttattcaccttaaaaaaggtgaa 50575997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 4605933 - 4605837
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||| ||||| || |||| ||||||||||||||||| || ||| | | |||||||||| |||||| || ||||||||||| |||||| |||| ||||    
T  4605933 gcataactcagttgacagagacatgcattgttatatgcaggggccaag-ttcaaacctcagacacctcatttattcaccttaaaaaaggtgaattcta 4605837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 9976417 - 9976372
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||    
T  9976417 cggacaccccacttattcaccttgaaaaaagtgaattctagccact 9976372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 19866537 - 19866582
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||    
T  19866537 cggacaccccacttattcaccttaaaaaaggtgaattctagccact 19866582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 42831974 - 42832031
Alignment:
Q  232 tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||| ||||||| || ||||  |||||||||| |||||||||||||||||||||||    
T  42831974 tgcattattatatgcaggggctggggttcaaaccccggacaccccacttattcacctt 42832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 48260232 - 48260179
Alignment:
Q  257 gttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    |||| |||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  48260232 gttcgaaccccggacaccccacttattcaccttgaaaaatgtgaattctagcca 48260179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 11238119 - 11238019
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| |||||   ||||||||| ||||||| || ||    ||||| || | ||||||||||||||||||| |||||||||| |||| ||||||    
T  11238119 gcatagctcagatggcatggacatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaattctagc 11238020  T
Q  309 c 309  Q
    |    
T  11238019 c 11238019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 33844668 - 33844724
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| |||||||||||||||||||| ||||||||| |||| | ||||||||    
T  33844668 ggttcgaaccccggacaccccacttattcactttgaaaaaggtgaattatagccact 33844724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 33949310 - 33949254
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| |||||||||||||||||||| ||||||||| |||| | ||||||||    
T  33949310 ggttcgaaccccggacaccccacttattcactttgaaaaaggtgaattatagccact 33949254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 52961173 - 52961081
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| |||||   ||||||||||||||||| || |||   ||||| |||| ||||| |||||||||||||| ||| ||||| ||||    
T  52961173 gcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaaccccggacgccccacttattcacgttggaaaaggtgaa 52961081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 7906397 - 7906314
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||| || ||||  ||||| ||||  ||||||||| |||||| ||||| |||||  |||| ||||||||||    
T  7906397 acatgcattgttatatgcaggggctggggttcgaacccgggacaccccgcttattgaccttaaaaaatgtgaattctagccact 7906314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 27655036 - 27654997
Alignment:
Q  269 gacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  27655036 gacaccccacttattcaccttgaaaaaggtgaattctagc 27654997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 30049834 - 30049900
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccactggttacttgac 323  Q
    |||||||||||| |||| ||| ||||||||||||||||||| || | ||||| |||||| ||||||||    
T  30049834 ggttcaaacctcagacatccctcttattcaccttgaaaaag-tgtattctagtcactggctacttgac 30049900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 39434644 - 39434702
Alignment:
Q  231 atgcattgttatatgtag-aggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||||||||||||||| || | ||| ||| ||||||||||||||||||||||||||||    
T  39434644 atgcattgttatatgtaggagccgatg-ttcgaacctcggacaccccacttattcacctt 39434702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 5684126 - 5684211
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| ||||||| ||||||||| ||||||| || || || || |  |||||| |||||||||||||||||| || |||||    
T  5684126 gcatagctcagttggcagagacatgcattattatatgcaggggtta-ggattgaacctcagacaccccacttattcactttaaaaaa 5684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 24168670 - 24168584
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| | | || |||||||||| |||||||||| | |   ||||| |||| | ||||||||||||||||||||| |||||    
T  24168670 gcatagctcagtttgtaggaacatgcattattatatgtagggaccggggttcgaaccccagacaccccacttattcaccttaaaaaa 24168584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 42801884 - 42801954
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccactt 280  Q
    |||||||||| || |||| ||||||||||||||||| ||||| |  ||||| |||| | ||||||||||||    
T  42801884 catagctcagttgacagagacatgcattgttatatgcagaggttggggttcgaaccccagacaccccactt 42801954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 47645887 - 47645845
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagagg 251  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||    
T  47645887 gcatagctcagttggcagagacatgcattgttatatgcagagg 47645845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 48565185 - 48565135
Alignment:
Q  262 aacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||||||| || ||||||||| |||| ||||| ||||    
T  48565185 aacctcggacaccccacttatttactttgaaaaaggtgaattctagacact 48565135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 50859436 - 50859357
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||| |||||| || |||   |||||||||| |||||||||||| ||||||||||  ||||| |||| ||||||||||    
T  50859436 atgcattgatatatgcaggggccggggttcaaaccccggacaccccacatattcacctt--aaaaggtgaattctagccact 50859357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 1576163 - 1576126
Alignment:
Q  258 ttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  1576163 ttcaaaccccggacaccccacttatttaccttgaaaaa 1576126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 5862133 - 5862174
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagagg 251  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  5862133 catagctcagttggcagggacatgcattgttatatgtagagg 5862174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 25270232 - 25270155
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||||||   |   | ||| |||||||||||||||||||||| |  |||||||||||||| ||||    
T  25270232 acatgcattgttatatgtaggatccgggattcgaacctcggacaccccacttatttaatttgaaaaagatgaattcta 25270155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 34560382 - 34560349
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  34560382 ggttcgaacctcggacaccccacttattcacctt 34560349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 37262151 - 37262094
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaa-gatgaactctagccact 312  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||| |||| |||||    
T  37262151 ggttcaaaccccggataccccacttattcaccttaaaaaatgatgaattctaaccact 37262094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 50501944 - 50501871
Alignment:
Q  234 cattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctag 307  Q
    |||| |||||||||| || |  ||||||||||||  ||||| |||||||||||||| |||| |||||| |||||    
T  50501944 catttttatatgtaggggatgaggttcaaacctcaaacacctcacttattcaccttaaaaaggatgaattctag 50501871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 4146338 - 4146374
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatg 245  Q
    ||||||||||| || ||||||||||||||||||||||    
T  4146338 gcatagctcagttgacagaaacatgcattgttatatg 4146374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 4354196 - 4354116
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| ||| ||||||||||||||||||||||||    
T  4354196 gcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcacctt 4354116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 13941370 - 13941426
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| ||| |||||||||||||||||||| |||||||||  |||| |||| |||||    
T  13941370 ggttcgaacttcggacaccccacttattcatcttgaaaaaagtgaattctaaccact 13941426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 19536721 - 19536796
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattca 285  Q
    ||||||||||| ||| ||  |||||||||| ||||||||| ||||  ||||| |||| |||||| ||||||||||||    
T  19536721 gcatagctcagttggtagggacatgcattgctatatgtaggggctggggttcgaacc-cggacatcccacttattca 19536796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 23336575 - 23336511
Alignment:
Q  214 gctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccac 278  Q
    |||||| ||| || |||||||||||||||||| || || | ||||||||||  ||||||||||||    
T  23336575 gctcaggtggtagcaacatgcattgttatatgcaggggttgtggttcaaactccggacaccccac 23336511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 23750201 - 23750257
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||  | |||||||||||||||| |||||||||| |||| |||| |||||    
T  23750201 ggttcaaaccctgaacaccccacttattcatcttgaaaaaggtgaattctaaccact 23750257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 29451380 - 29451352
Alignment:
Q  261 aaacctcggacaccccacttattcacctt 289  Q
    |||||||||||||||||||||||||||||    
T  29451380 aaacctcggacaccccacttattcacctt 29451352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 39433410 - 39433442
Alignment:
Q  257 gttcaaacctcggacaccccacttattcacctt 289  Q
    |||| ||||||||||||||||||||||||||||    
T  39433410 gttcgaacctcggacaccccacttattcacctt 39433442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 34524879 - 34524993
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || |||   ||||| | || || ||||||||||||||||||| ||||||| |||| ||||||    
T  34524879 gcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaattctagc 34524978  T
Q  309 cactggttacttgac 323  Q
    |||||| ||||||||    
T  34524979 cactggctacttgac 34524993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 26669750 - 26669647
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| ||  ||||||||  |||||||||| ||||  ||||| |||| | |||||||||||||||||||||||||||| |||| ||||||    
T  26669750 gcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattctagc 26669651  T
Q  309 cact 312  Q
    ||||    
T  26669650 cact 26669647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 22730793 - 22730689
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaa-aagatgaactctag 307  Q
    ||||| ||||| ||||||| ||||||||||||||||| || | ||   |||| |||||||||||||||||||||||||||| ||| ||| |||| |||||    
T  22730793 gcataactcagttggcagagacatgcattgttatatgcagggactgaagttcgaacctcggacaccccacttattcaccttaaaataaggtgaattctag 22730694  T
Q  308 ccact 312  Q
    |||||    
T  22730693 ccact 22730689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 7233995 - 7234070
Alignment:
Q  235 attgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||||||||| || ||||  ||||  ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  7233995 attgttatatgcaggggctggggtttgaacctcggacaccccacttattcaccttgaaaaaggtgaattctagcca 7234070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 5134526 - 5134445
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||||||| ||| |||||||||||||| ||||||   ||||| |||||| |||||||||||||||||||||    
T  5134526 gcatagctcagttggcagagacaatgcattgttatatgcagaggccgcggttcgaacctcagacaccccacttattcacctt 5134445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 8309168 - 8309272
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttg-aaaaagatgaactctag 307  Q
    ||||||||||| ||||||  ||||||||||||||||| |  ||| | | ||| |||| |||||||||||| ||||||||||| |||||| |||| |||||    
T  8309168 gcatagctcagttggcagggacatgcattgttatatgcatgggccaagtttcgaaccccggacaccccacctattcaccttgaaaaaaggtgaattctag 8309267  T
Q  308 ccact 312  Q
    |||||    
T  8309268 ccact 8309272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 30833021 - 30833122
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||||| |||| ||||||  ||||||||||||||||| || ||    ||||| |||| |||||||||||||||||| |||||||||||  ||| ||||||    
T  30833021 gcatagttcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaattctagc 30833120  T
Q  309 ca 310  Q
    ||    
T  30833121 ca 30833122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 29430388 - 29430307
Alignment:
Q  211 atagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    |||| |||| ||||||||||| |||||||||| ||||  ||    ||||| |||||||||||||||||||||||||||| ||||||    
T  29430388 atagttcagttggcagaaacaagcattgttatgtgtattgg----ggttcgaacctcggacaccccacttattcacctttaaaaag 29430307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 6455477 - 6455560
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| |||| |||||||||  ||||  ||||| |||  ||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  6455477 acatacattattatatgtatgggctggggttcgaactccggacaccctacttattcaccttgaaaaagatgaattctagacact 6455560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 10455746 - 10455833
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggaca-ccccacttattcaccttgaaaaa 295  Q
    |||||| |||| |||||| |||||||||||||||||| || |||   ||||| |||| |||||| |||||||||||| ||||||||||    
T  10455746 gcatagttcagttggcaggaacatgcattgttatatgcaggggccggggttcgaaccccggacacccccacttattctccttgaaaaa 10455833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 19680319 - 19680236
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||| ||  ||   ||||| |||| |||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  19680319 acatgcattgttatatgcaggagccggggttcgaaccccggacaccccacttattctccttgaaaaaggtgaattctagacact 19680236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 8253661 - 8253596
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||||||||| || ||||  ||||| |||| | |||||||||||||||||||||||||||    
T  8253661 acatgcattgttatatgcaggggctggggttcgaacc-cagacaccccacttattcaccttgaaaaa 8253596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 2970218 - 2970292
Alignment:
Q  234 cattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    |||| |||||||||| |||   |||||||||| |||||||||||||||||||||||  | |||||||| ||||||||    
T  2970218 cattattatatgtaggggccgaggttcaaaccccggacaccccacttattcacctt--ataagatgaattctagcca 2970292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 4844153 - 4844250
Alignment:
Q  215 ctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| ||||||  ||||||||||||||||| || ||    |||| ||||||| |||||| ||||||||||||||||||||  |||| |||| |||||    
T  4844153 ctcagttggcagggacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattctaaccact 4844250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 6530248 - 6530215
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||||||||||||||||||||||    
T  6530248 ggttcaaacctcggacaccccacttattcacctt 6530215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 9051360 - 9051279
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||| | ||| ||||| |||| |||||| | |||||||||  ||||||||||  ||| ||||||||||    
T  9051360 atgcattgttatatgtagggactagggttcgaaccccggacaactcacttattcgtcttgaaaaaggagaattctagccact 9051279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 26528618 - 26528651
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||||||||||||||||||||||    
T  26528618 ggttcaaacctcggacaccccacttattcacctt 26528651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 9422837 - 9422941
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttga-aaaagatgaactctag 307  Q
    ||||| ||||| ||||||  ||||||||||||||||  |   |||  ||||| |||  ||||||||||||||||||||||||| ||||| |||| |||||    
T  9422837 gcataactcagttggcagggacatgcattgttatatacaagagctggggttcgaacaccggacaccccacttattcaccttgataaaaggtgaattctag 9422936  T
Q  308 ccact 312  Q
    |||||    
T  9422937 ccact 9422941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 14949111 - 14949007
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacacccc-acttattcaccttgaaaaagatgaactctag 307  Q
    ||||| ||||| |||||||||||| |||| ||||||| |||||    ||||| |||  |||||||||| | |||||||||||||||||| |||| | |||    
T  14949111 gcataactcagttggcagaaacatacattattatatgcagaggtcggggttcgaactccggacacccccatttattcaccttgaaaaaggtgaattatag 14949012  T
Q  308 ccact 312  Q
    |||||    
T  14949011 ccact 14949007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 24256927 - 24257023
Alignment:
Q  216 tcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| ||| ||| ||||||||| ||||||| || |||   ||||| |||| |||| ||||||||||||||||||||||||  | || ||||||||||    
T  24256927 tcagttggtagagacatgcattattatatgcaggggccgaggttcgaaccccggataccccacttattcaccttgaaaaaagtaaattctagccact 24257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 25020619 - 25020539
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||| || |  ||||||| ||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  25020619 gcatagctcagctggtaggacgatgcattattatatgcaggggcctgggttcgaaccccggacaccccacttattcacctt 25020539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 2945599 - 2945674
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttatt 283  Q
    ||||||||||| ||||||  ||| |||||||||||||| || ||    ||||||||||||||||||||||||||||    
T  2945599 gcatagctcagttggcagggacaatgcattgttatatgcaggggtcggggttcaaacctcggacaccccacttatt 2945674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 13094490 - 13094561
Alignment:
Q  235 attgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||  | ||||| |||| || |||| ||||||||| || |||||||||||||| ||||    
T  13094490 attgttatatgtagaggtcagggttcgaaccccgaacactccacttatttactttgaaaaagatgaattcta 13094561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 9491804 - 9491746
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| |||||||||| |||   ||||| |||| |||||||||||||||||||||||    
T  9491804 atgcattattatatgtaggggccggggttcgaaccccggacaccccacttattcacctt 9491746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 20150011 - 20149973
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  20150011 ggacaccccacttattcaccttgaaaaaggtgaattcta 20149973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 22182821 - 22182859
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  22182821 ggacaccccacttattcaccttgaaaaaggtgaattcta 22182859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 7563620 - 7563587
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  7563620 ggttcaaaccccggacaccccacttattcacctt 7563587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 1395614 - 1395578
Alignment:
Q  276 cacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  1395614 cacttattcaccttgaaaaaggtgaattctagccact 1395578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 10828360 - 10828408
Alignment:
Q  262 aacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    |||||||||||| | |||||||||||||||||||  |||| ||||||||    
T  10828360 aacctcggacacgctacttattcaccttgaaaaaagtgaattctagcca 10828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 17305580 - 17305608
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaag 296  Q
    |||||||||||||||||||||||||||||    
T  17305580 ggacaccccacttattcaccttgaaaaag 17305608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 17347305 - 17347345
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||| ||||| |||||||||||||||||||||| ||||||    
T  17347305 ggttcgaaccttggacaccccacttattcaccttaaaaaag 17347345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 17751408 - 17751344
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaa 293  Q
    ||||||||||||||||| ||  ||   ||||| |||| |||||||||||||||||||| ||||||    
T  17751408 acatgcattgttatatgcaggagcagaggttcgaaccccggacaccccacttattcactttgaaa 17751344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 19279501 - 19279533
Alignment:
Q  257 gttcaaacctcggacaccccacttattcacctt 289  Q
    |||| ||||||||||||||||||||||||||||    
T  19279501 gttcgaacctcggacaccccacttattcacctt 19279533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 1043 - 1146
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| ||  ||||||||  |||||||||| ||||  ||||| |||| | |||||||||||||||||||||||||||| |||| ||||||    
T  1043 gcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattctagc 1142  T
Q  309 cact 312  Q
    ||||    
T  1143 cact 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 220453 - 220350
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||| ||||||||| |||||  | ||||| || | |||||||||||||||||||||||||||||| |||| |||| |    
T  220453 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 220354  T
Q  309 cact 312  Q
    ||||    
T  220353 cact 220350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 689608 - 689505
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||| ||||||||| |||||  | ||||| || | |||||||||||||||||||||||||||||| |||| |||| |    
T  689608 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 689509  T
Q  309 cact 312  Q
    ||||    
T  689508 cact 689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 734076 - 733973
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||| ||||||||| |||||  | ||||| || | |||||||||||||||||||||||||||||| |||| |||| |    
T  734076 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 733977  T
Q  309 cact 312  Q
    ||||    
T  733976 cact 733973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 857972 - 857869
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||| ||||||||| |||||  | ||||| || | |||||||||||||||||||||||||||||| |||| |||| |    
T  857972 gcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaac 857873  T
Q  309 cact 312  Q
    ||||    
T  857872 cact 857869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 216238 - 216146
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||||||  |||| |||||||||||| |||||  | ||||| || | |||||||| ||||||||||||||||||||| ||||    
T  216238 gcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaa 216146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 692798 - 692706
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||||||  |||| |||||||||||| |||||  | ||||| || | |||||||| ||||||||||||||||||||| ||||    
T  692798 gcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaa 692706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 697007 - 696915
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||||||  |||| |||||||||||| |||||  | ||||| || | |||||||| ||||||||||||||||||||| ||||    
T  697007 gcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaa 696915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 729861 - 729769
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||||||  |||| |||||||||||| |||||  | ||||| || | |||||||| ||||||||||||||||||||| ||||    
T  729861 gcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaa 729769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 853756 - 853664
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||||||  |||| |||||||||||| |||||  | ||||| || | |||||||| ||||||||||||||||||||| ||||    
T  853756 gcatagctcagttggcagggacatacattgttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaa 853664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 24572942 - 24572839
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||| ||||| || |||||||||||||||   |||||||||| |  ||||| || ||||||||||| |||| | |||| ||||||    
T  24572942 gcatagctcagttggcagagacatgtatcgttatatgtagaggccggggttcaaaccccatacacctcatttattcaccttaaaaatgttgaattctagc 24572843  T
Q  309 cact 312  Q
    ||||    
T  24572842 cact 24572839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 39432419 - 39432333
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| ||||||  ||||||| ||||||||| || || |  ||||| |||||| |||||||||||||||||| ||||||||    
T  39432419 gcatagctcagttggcagggacatgcaatgttatatgcaggggttggggttcgaacctcagacaccccacttattcactttgaaaaa 39432333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 35779804 - 35779857
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  35779804 ggttcgaacctaggacaccccacttattcatcttgaaaaagatgaattctagcc 35779857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 10970270 - 10970371
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| || |  ||||||| ||||||| || ||||  |||||||||| || ||||||||||||||||||||  | |||||||| ||||||    
T  10970270 gcatagctcagttggtaggataatgcattattatatgcaggggctggggttcaaaccccgaacaccccacttattcacctt--ataagatgaattctagc 10970367  T
Q  309 cact 312  Q
    ||||    
T  10970368 cact 10970371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 25470890 - 25470834
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |||| ||||||||||    
T  25470890 ggttcgaacctcggacaccccatttattcaccttgaagaaggtgaattctagccact 25470834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 39208909 - 39208857
Alignment:
Q  260 caaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||| |||||||||||||| |||||| |||| ||||||||||    
T  39208909 caaacctcggacacctcacttattcacctttaaaaaggtgaattctagccact 39208857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 6325333 - 6325376
Alignment:
Q  269 gacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||    
T  6325333 gacaccccactcattcaccttgaaaaaggtgaattctagccact 6325376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 14011129 - 14011026
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||||| |||| ||||||  ||||||||||||||||| || |||    |||| ||||||||||| |||||||||||| ||| |||||  |||| |||| |    
T  14011129 gcatagttcagttggcagggacatgcattgttatatgcaggggccggagttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaac 14011030  T
Q  309 cact 312  Q
    ||||    
T  14011029 cact 14011026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 7649555 - 7649612
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| |||||||||| ||||  ||||| ||||||| ||||||||||||||||||||    
T  7649555 atgcattattatatgtag-ggctggggttcgaacctcgaacaccccacttattcacctt 7649612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 10292355 - 10292433
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcac 286  Q
    ||||||||||| ||||||  ||| |||||| ||||||| || ||||  | ||| |||||||||||||||||||||||||    
T  10292355 gcatagctcagttggcagggacaatgcattattatatgcaggggctgagattcgaacctcggacaccccacttattcac 10292433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 17467328 - 17467366
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaa 294  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  17467328 ggttcgaaccccggacaccccacttattcaccttgaaaa 17467366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 26900470 - 26900529
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccactggtta 317  Q
    |||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||| ||||    
T  26900470 ggttcaaacctcggacaccccatttattcatctt--aaaaggtgaattctagccactagtta 26900529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 34073308 - 34073250
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| |||||||||| ||  | ||||| |||| |||||||||||||||||||||||    
T  34073308 atgcattattatatgtaggggtcaaggttcgaaccccggacaccccacttattcacctt 34073250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 11900572 - 11900672
Alignment:
Q  211 atagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||||||| |||||| |||||||||| ||||||| || || |  ||||  |||  | || |||||||||||||| |||||||||| |||| ||||||||    
T  11900572 atagctcagttggcaggaacatgcattattatatgcaggggttgaggtttgaaca-cagataccccacttattcatcttgaaaaaggtgaattctagcca 11900670  T
Q  311 ct 312  Q
    ||    
T  11900671 ct 11900672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 12560036 - 12560136
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| |||||| ||||  |||||||||||| || || |  ||||| ||||||  ||||| |||||||| |||||||||||| | || ||||||    
T  12560036 gcatagctcagttggcaggaacaa-cattgttatatgcaggggttggggttcgaacctcaaacacctcacttatttaccttgaaaaaggtcaattctagc 12560134  T
Q  309 ca 310  Q
    ||    
T  12560135 ca 12560136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 33570473 - 33570440
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  33570473 ggttcgaacctcggacaccccacttattcacctt 33570440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 43554454 - 43554551
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttc-aaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||| ||||||  |||| ||||||||||||||| || |  ||||| || || | |||| || |||||||||| |||||||||||||| ||||    
T  43554454 catagctcagttggcagcgacatccattgttatatgtaggggttggggttcgaaccccctgacatcctacttattcactttgaaaaagatgaattcta 43554551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 4604397 - 4604341
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| || |||| ||||||||||||||| ||||||||||| |||| |||||    
T  4604397 ggttcgaaccccgaacactccacttattcaccttaaaaaagatgaattctaaccact 4604341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 15042456 - 15042376
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  15042456 gcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcacctt 15042376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 18546143 - 18546179
Alignment:
Q  270 acaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18546143 acaccccacttattcaccttgacaaaggtgaactcta 18546179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 26657860 - 26657948
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggaca-ccccacttattcaccttgaaaaag 296  Q
    ||||||||||| ||| ||  ||||||||||||||||| || | |   ||||| |||| | |||| ||||||||||||||||||||||||    
T  26657860 gcatagctcagttggtagggacatgcattgttatatgcagggaccggggttcgaaccccagacacccccacttattcaccttgaaaaag 26657948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 43468796 - 43468716
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  |||||||||||||||||| ||    ||||| |||  |||||||||||||||||||||||    
T  43468796 gcatagctcagttggtaggacaatgcattgttatatgtaggggtcggggttcgaactccggacaccccacttattcacctt 43468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 7392397 - 7392294
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||  |||||| |||||||||||||||||| ||||| |  ||||  |||| || |||||||||||||||||||||||||| ||||| | ||||    
T  7392397 gcatagctcaattggcaggaacatgcattgttatatgcagaggttggggtttgaaccccgaacaccccacttattcaccttgaaaaatatgaattatagc 7392298  T
Q  309 cact 312  Q
    ||||    
T  7392297 cact 7392294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 35498402 - 35498504
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| ||||| ||||||  ||||||||| ||||||| || || |  ||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||    
T  35498402 gcataactcagttggcagggacatgcattattatatgcaggggttg-ggttcaaacttcggacaccccacttattcactttgaaaaaggtgaattctagc 35498500  T
Q  309 cact 312  Q
    ||||    
T  35498501 cact 35498504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 43635592 - 43635695
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| ||||| ||||||||||||||||||||||||| || ||    ||||| |||| |||||||||||||||||||||||  ||| | |||| ||||||    
T  43635592 gcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcgaaccccggacaccccacttattcaccttacaaagggtgaattctagc 43635691  T
Q  309 cact 312  Q
    ||||    
T  43635692 cact 43635695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 1649156 - 1649259
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| ||  | |||||||||| |||| || ||| | ||||| ||||  ||||||||||||||||||||||||||| | |||| ||||||    
T  1649156 gcatagctcagttggtagggatatgcattgttttatgcaggggccagggttcgaaccctggacaccccacttattcaccttgaaaatggtgaattctagc 1649255  T
Q  309 cact 312  Q
    ||||    
T  1649256 cact 1649259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 26734315 - 26734259
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||   |||||||||||||||||||||||||||| |||| ||||||||||    
T  26734315 ggttcaaaccctagacaccccacttattcaccttgaaaaaggtgaattctagccact 26734259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 21877762 - 21877676
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    |||||||| || ||||||  ||||| ||||||||||| || ||||  ||||| ||||||| |||||||||||||||| ||||||||||    
T  21877762 gcatagctaagttggcaggtacatggattgttatatgcag-ggctggggttcgaacctcgaacaccccacttattcatcttgaaaaag 21877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 35195847 - 35195934
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||||||||| ||||||  ||||||||| ||||||| || |||   ||||| |||| || |||||||| ||||||||||||||||||    
T  35195847 gcatagctcagttggcagggacatgcattattatatgcaggggccggggttcgaaccccgaacaccccatttattcaccttgaaaaag 35195934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 1513498 - 1513576
Alignment:
Q  216 tcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaa 294  Q
    |||| ||||||  |||||||||||||||||||| || |  ||||| |||  || |||||||||||||||||||||||||    
T  1513498 tcagttggcagggacatgcattgttatatgtaggggttgaggttcgaacaccgaacaccccacttattcaccttgaaaa 1513576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 10020559 - 10020457
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    |||||||||| || |||  ||||||||||||||||| || || |  ||||| |||| || ||| |||||||||||| |||||||||| |||| |||| ||    
T  10020559 catagctcagttgacagggacatgcattgttatatgcaggggttggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaattctaccc 10020460  T
Q  310 act 312  Q
    |||    
T  10020459 act 10020457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 44409265 - 44409319
Alignment:
Q  270 acaccccacttattcaccttgaaaaagatgaactctagccact-ggttacttgac 323  Q
    ||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||    
T  44409265 acaccccacttattcaccttgaaaaaggtgaattctaaccactaggttacttgac 44409319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 45011727 - 45011669
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| ||||||| |||||| | ||||| ||||||||| ||||||||||||||||||    
T  45011727 atgcattattatatgcagaggccagggttcgaacctcggagaccccacttattcacctt 45011669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 21285445 - 21285364
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||||||  ||| |||||||||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  21285445 gcatagctcagttggcagggacaatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcacctt 21285364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 24427366 - 24427451
Alignment:
Q  208 tgcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaa 293  Q
    |||||| ||||| ||||||| ||||||||||||||||| || ||  | ||||| |||| || | |||||| |||||||||||||||    
T  24427366 tgcataactcagttggcagagacatgcattgttatatgcaggggtcaaggttcgaaccccgaataccccatttattcaccttgaaa 24427451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 37129403 - 37129370
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||||||||||||||||||||||    
T  37129403 ggttcaaacctcggacaccccacttattcacctt 37129370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 7465470 - 7465542
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccactta 281  Q
    ||||||||||| ||||||| ||||||||| ||||||| || |||   ||||| |||| |||||||||||||||    
T  7465470 gcatagctcagttggcagagacatgcattattatatgcaggggccggggttcgaaccccggacaccccactta 7465542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 10958084 - 10958140
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| ||||||||||||||||||||||  |||||| |||| ||||||||||    
T  10958084 ggttcgaaccccggacaccccacttattcacctcaaaaaaggtgaattctagccact 10958140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 24579358 - 24579274
Alignment:
Q  228 aacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||| ||||||| || || |  | ||| |||| | |||||||||||||||||||||||||||| |||| |||| |||||    
T  24579358 aacatgcattattatatgcaggggatgagattcgaaccccagacaccccacttattcaccttgaaaaaggtgaattctatccact 24579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 36316065 - 36315985
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| ||||||||||||||||||||||||||||    
T  36316065 gcatagctcagttggtaggataatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcacctt 36315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 23470591 - 23470505
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||||||||| |||||  |||||| ||| |||||||||| |||||  |||| |||| |||||| |||| ||||||| ||||||||||    
T  23470591 gcatagctcagttggcatgaacatgtattattatatgtag-ggctagagttcgaaccccggacatcccatttattcatcttgaaaaag 23470505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 25711200 - 25711145
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcac 286  Q
    ||||||| |||||||||| |||   ||||| |||||||||||||||||||||||||    
T  25711200 atgcattattatatgtaggggccggggttcgaacctcggacaccccacttattcac 25711145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 5773153 - 5773222
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacac--cccacttattcaccttgaaaaag 296  Q
    |||||||||||||||||||| ||    ||||| |||| |||||||  |||||||||||||||||||||||    
T  5773153 acatgcattgttatatgtaggggtcgaggttcgaaccccggacacatcccacttattcaccttgaaaaag 5773222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 29658341 - 29658283
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  29658341 atgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcacctt 29658283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 2567901 - 2567820
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||| ||||||| || |||   ||||| |||| ||| ||||||||||||| |||||||||||| |||| |||| |||||    
T  2567901 atgcatttttatatgcaggggccggggttcgaaccccggtcaccccacttattaaccttgaaaaaggtgaattctaaccact 2567820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 16814702 - 16814787
Alignment:
Q  210 catagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    |||||||||| |||||  |||||||||| |||||||||| ||    ||||| |||| | ||||| |||||||||||| ||||||||    
T  16814702 catagctcagttggcaagaacatgcattattatatgtaggggtcggggttcgaaccccagacactccacttattcactttgaaaaa 16814787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 42181548 - 42181471
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||| || |||    ||||||||| |  |||||||||||||| ||||| ||||||||||| ||||    
T  42181548 acatgcattgttatatgcaggggccgaagttcaaaccccaaacaccccacttattgaccttaaaaaagatgaattcta 42181471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 11808062 - 11808122
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||||| || ||    ||||| |||| |||||||||||||||||||||||    
T  11808062 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcacctt 11808122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 27047806 - 27047726
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| |||||||||||||||| |||||||||||    
T  27047806 gcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccatttattcacctt 27047726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 37917396 - 37917488
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    ||||||||||| ||| || |||||||||  ||||||| || || |  ||||||||||    ||||||||||||||||| |||||||| |||||    
T  37917396 gcatagctcagttggtaggaacatgcataattatatgcaggggttggggttcaaaccctaaacaccccacttattcactttgaaaaaaatgaa 37917488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 43712357 - 43712301
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| ||||||||| ||||||||||| | |||||||||||  ||| ||||||||||    
T  43712357 ggttcgaacctcggataccccacttatcctccttgaaaaaggagaattctagccact 43712301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 31907675 - 31907741
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||||||||| || ||  ||||||||||||||| ||||||||||||||||||||||||||    
T  31907675 acatgcattgttatatgcaggggtcatggttcaaacctcgaacaccccacttattcaccttgaaaaa 31907741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 17557040 - 17557119
Alignment:
Q  215 ctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||| ||||||| |||||||||||||||||||| ||    |||||||||| ||||||||||||||||||||||| |||||    
T  17557040 ctcagttggcagagacatgcattgttatatgtaggggtcggggttcaaacc-cggacaccccacttattcaccttaaaaaa 17557119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 40384270 - 40384358
Alignment:
Q  224 cagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| ||||||||| ||||||| || ||||  ||||| |||  ||||||||||||||||||||||| |||||| |||| ||||||||||    
T  40384270 cagagacatgcattattatatgcagcggctggggttcgaactccggacaccccacttattcaccttaaaaaaggtgaattctagccact 40384358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 10106634 - 10106721
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||||||||| ||||||  |||| |||| |||||||||| ||| |  |||| |||| ||||||||||||||||||| ||||||||||    
T  10106634 gcatagctcagttggcagggacatccattattatatgtaggggccaaagttcgaaccccggacaccccacttattcatcttgaaaaag 10106721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 11246585 - 11246482
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||  ||||||||||||||||| || ||    || ||||||| | |||| |||||||||||| |||||||||| |||| ||||||    
T  11246585 gcatagctcagttggcagggacatgcattgttatatgcaggggtcggggctcaaaccccagacatcccacttattcagcttgaaaaaggtgaattctagc 11246486  T
Q  309 cact 312  Q
    ||||    
T  11246485 cact 11246482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 35813333 - 35813231
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| || |||  ||||||||||||||||| || ||||  ||||| ||||  ||||||||||||||||| | ||||||||| |||| ||||||    
T  35813333 gcatagctcagttgacagggacatgcattgttatatgcaggggctcaggttcgaacccaggacaccccacttattc-ctttgaaaaaggtgaattctagc 35813235  T
Q  309 cact 312  Q
    ||||    
T  35813234 cact 35813231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 39684261 - 39684345
Alignment:
Q  228 aacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||||| ||  | | || ||||| |||||| |||||||||||||||| |||||| |||| |||| |||||    
T  39684261 aacatgcattgttatatgtaggggtcaggatttaaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccact 39684345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 28537159 - 28537242
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||| |  |||   ||||| |||| |||||||||||||||||||| ||||||| | |||| ||||||||||    
T  28537159 acatgcattgttatatgcatgggccggggttcgaaccccggacaccccacttattcactttgaaaatggtgaattctagccact 28537242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 31556870 - 31556925
Alignment:
Q  257 gttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| |||| |||||||||||||||||||||||||||| | |||| ||||||||||    
T  31556870 gttcgaaccccggacaccccacttattcaccttgaaaagggtgaattctagccact 31556925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 37986905 - 37986855
Alignment:
Q  262 aacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||||||||||    
T  37986905 aaccccggacatcccacttattcaccttgaaaaaggtgaattctagccact 37986855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 33599913 - 33600018
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||| |||||| ||||||||||||||||| |||||| |||  | |  ||||| || | |||||| |||||||||||||||| |||||| | || || |||    
T  33599913 gcattgctcagttggcagaaacatgcattattatatataggagttggggttcgaatcccggacatcccacttattcaccttaaaaaaggtaaattccagc 33600012  T
Q  309 cactgg 314  Q
    ||||||    
T  33600013 cactgg 33600018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 6614129 - 6614053
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattca 285  Q
    ||||| ||||||||| ||||  ||||||| ||||||| || |||   ||||| ||||||||||||||||||||||||    
T  6614129 gcataactcagctggtagaacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattca 6614053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 3536027 - 3535924
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||||| |||| ||||||  ||||||||||||||||  ||  ||   ||||| |||| ||||||||||||||||||||||| |||||  |||| |||| |    
T  3536027 gcatagttcagttggcagggacatgcattgttatatacaggagccggggttcgaaccccggacaccccacttattcaccttaaaaaaagtgaattctaac 3535928  T
Q  309 cact 312  Q
    ||||    
T  3535927 cact 3535924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 22687911 - 22687869
Alignment:
Q  270 acaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||||||||||||||| |||| |||| |||||    
T  22687911 acaccccacttattcaccttgaaaaaggtgaattctaaccact 22687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 27006402 - 27006444
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    ||||||| |||||||||||||||||||||| |||| |||||||    
T  27006402 cggacactccacttattcaccttgaaaaaggtgaattctagcc 27006444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 40250268 - 40250182
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| |||||| |||||||||||||||||| ||  |    ||||| ||||||| |||||| |||||||| | ||||||||    
T  40250268 gcatagctcagttggcagtaacatgcattgttatatgcaggagtcggggttcgaacctcgaacaccctacttattctcattgaaaaa 40250182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 20699461 - 20699413
Alignment:
Q  265 ctcggacaccccacttattcaccttgaaaaagatgaactctagccactgg 314  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||||||    
T  20699461 ctcggacaccccacttattcacctt-aataaggtgaattctagccactgg 20699413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 42260753 - 42260712
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    |||||| |||||||||||||||| ||||||||||| ||||||    
T  42260753 cggacatcccacttattcacctttaaaaagatgaattctagc 42260712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 22397032 - 22396980
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| |||| ||||||||||||||||||| |||||||| | |||| ||||||    
T  22397032 ggttcgaaccccggacaccccacttattcatcttgaaaagggtgaattctagc 22396980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 38129045 - 38129001
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||| |||||||||||||||||||| |||||| |||| |||||    
T  38129045 ggacactccacttattcaccttgaaaatgatgaattctaaccact 38129001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 32288383 - 32288480
Alignment:
Q  212 tagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    |||||||| || |||||||||||||| |||||||||| |     ||||| |||||||||||||||||||||||||||||||||| || || |||||||    
T  32288383 tagctcagttgacagaaacatgcattattatatgtagggatcggggttcgaacctcggacaccccacttattcaccttgaaaaaaataaattctagcc 32288480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 1244620 - 1244676
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||    
T  1244620 ggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattctagccact 1244676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 10602021 - 10602113
Alignment:
Q  221 tggcagaaacatgcattgttatatgtagaggctatggttcaaacct-cggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||| ||||||||||||||||| || ||    ||||| ||||  |||||||||||||||||||| |||||||||||||| ||||||||||    
T  10602021 tggcagagacatgcattgttatatgcaggggacggggttcgaacccacggacaccccacttattcactttgaaaaagatgaattctagccact 10602113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 5029191 - 5029088
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| ||  | ||||||| ||||||| ||||||    |||| || |||| |||||||||||||||||||||||||||||||| |||| |    
T  5029191 gcatagctcagttggtaggtatatgcattattatatgcagaggccggagttcgaatctcgaacaccccacttattcaccttgaaaaagatgaattctacc 5029092  T
Q  309 cact 312  Q
    ||||    
T  5029091 cact 5029088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 41305157 - 41305054
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| |||||||  |||| |||  |||||| || ||||  |||||||||  |||| ||||||||||||||||||||||||| |||| || |||    
T  41305157 gcatagctcagttggcagaggcatgtattagtatatgcaggggctgaggttcaaactccggataccccacttattcaccttgaaaaaggtgaattcgagc 41305058  T
Q  309 cact 312  Q
    ||||    
T  41305057 cact 41305054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 29896193 - 29896155
Alignment:
Q  268 ggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  29896193 ggacaccccacttattcaccttgaaaaagatgaattcta 29896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 580874 - 580773
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| || |  ||||||| ||||||| || |||   ||||| |||| |||||||||||||||||||||||  | |||||||| ||||||    
T  580874 gcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcacctt--ataagatgaattctagc 580777  T
Q  309 cact 312  Q
    ||||    
T  580776 cact 580773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 12206549 - 12206605
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| || ||||||| ||||||||||||||||||| |||| ||||||||||    
T  12206549 ggttcgaaccccgaacaccccgcttattcaccttgaaaaaggtgaattctagccact 12206605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 19064963 - 19064903
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||||||||||||||||||||||    ||| ||||||| |||||||| |||||||||||    
T  19064963 acatgcattgttatatgtagaggctggaattcgaacctcgaacaccccatttattcacctt 19064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 37912480 - 37912516
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaa 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37912480 ggttcaaaccccggacaccccacttattcaccttgaa 37912516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 9520834 - 9520897
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaa 294  Q
    |||||||||||||||||| || ||  |||| |||| || |||||||||||||||||||| ||||    
T  9520834 atgcattgttatatgtaggggttagagttcgaaccccgaacaccccacttattcaccttaaaaa 9520897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 18089733 - 18089836
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||||||| ||||||||| |  |||| || ||| |  |||| |||| | |||||| ||||||||||||||||||||  |||| |||||     
T  18089733 gcatagctcagttggcagagacatgcattatactatgcaggggccagagttcgaaccccagacacctcacttattcaccttgaaaaacgtgaattctagt 18089832  T
Q  309 cact 312  Q
    ||||    
T  18089833 cact 18089836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 18386881 - 18386805
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    ||||||| |||||||||| ||||  ||||| |||  |||||||||||||||||||||||  | |||||||| |||||||    
T  18386881 atgcattattatatgtaggggctggggttcgaactccggacaccccacttattcacctt--ataagatgaattctagcc 18386805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 34107338 - 34107381
Alignment:
Q  269 gacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||||||||||||  |||| ||||||||||    
T  34107338 gacaccccacttattcaccttgaaaaatgtgaattctagccact 34107381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 37516014 - 37516097
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||||||||||||| || |  ||||| ||||||| |||| | | ||||||||||| ||||| ||||| ||||||||||    
T  37516014 acatgtattgttatatgtaggggttggggttcgaacctcgaacactctatttattcaccttaaaaaatatgaattctagccact 37516097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 39334972 - 39334869
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| ||||| ||||||  ||||||||| ||||||  || ||||  ||||| |||  | |||| ||||||||||||| ||||||||| |||| ||||||    
T  39334972 gcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttgaaaaaggtgaattctagc 39334873  T
Q  309 cact 312  Q
    ||||    
T  39334872 cact 39334869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 3037691 - 3037633
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||||||| || |||   ||||| |||| |||||||||||||||||||||||    
T  3037691 atgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcacctt 3037633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 18065258 - 18065344
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| ||| |||  |||||||||||||||| || || |  ||||| |||| || |||||  |||||||||||||||||||    
T  18065258 gcatagctcagttggtagaggcatgcattgttatatgcaggggttgaggttcgaaccccgaacaccttacttattcaccttgaaaaa 18065344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 22355147 - 22355189
Alignment:
Q  269 gacaccccacttattcaccttgaaaaagatgaactctagccac 311  Q
    |||||||||||||||||||||| ||||| |||| |||||||||    
T  22355147 gacaccccacttattcaccttgcaaaaggtgaattctagccac 22355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 32943365 - 32943423
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| ||||||| |||||||  ||||| ||  ||||||||||||||||||||||||    
T  32943365 atgcattattatatgcagaggctggggttcgaatttcggacaccccacttattcacctt 32943423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 36190105 - 36190155
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcac-cttgaaaaagatgaactct 305  Q
    ||||| |||||| ||||||||||||||||||  ||||||||||||||||||    
T  36190105 ggttcgaacctcagacaccccacttattcacttttgaaaaagatgaactct 36190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 34018114 - 34018081
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  34018114 ggttcgaacctcggacaccccacttattcacctt 34018081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 35694863 - 35694779
Alignment:
Q  216 tcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    |||| ||||||  ||||||||| ||||||||||||||   ||||| |||| | ||||||||| ||||||| ||| |||||||||||    
T  35694863 tcagttggcagggacatgcatt-ttatatgtagaggccggggttcgaaccccagacaccccatttattcatcttaaaaaagatgaa 35694779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 36386149 - 36386108
Alignment:
Q  265 ctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  36386149 ctcggacaccccacttattcactttaaaaaagatgaattcta 36386108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 36413784 - 36413865
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||||||||||||||| || |||    |||| ||||  ||||||||||||||||||| ||||||||| |||| | ||||||    
T  36413784 acatgcattgttatatgcaggggccggagttcgaaccctggacaccccacttattcactttgaaaaaggtgaattttagcca 36413865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 42211531 - 42211616
Alignment:
Q  216 tcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    |||| ||||||  |||||||||||||||| |||||  |   |||| ||| |||| ||||||||||||||||||| || ||||||||    
T  42211531 tcagttggcagtgacatgcattgttatatatagagattgaagttcgaacgtcggtcaccccacttattcaccttaaagaagatgaa 42211616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 8234883 - 8234803
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  || |||| |||||||||| |||   ||||| |||| |||||||||||||||||||||||    
T  8234883 gcatagctcagttggtaggacaatacattattatatgtaggggccggggttcgaaccccggacaccccacttattcacctt 8234803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 18054989 - 18055049
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||||||||||||||||| || | |||||||||| || |||| |||| |||||| ||||    
T  18054989 acatgcattgttatatgtaggggttgtggttcaaacttcagacatcccatttattctcctt 18055049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 29713133 - 29713077
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||| |||| | ||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  29713133 ggttcgaaccccagacaccctacttatttaccttaaaaaagatgaattctagccact 29713077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 44132652 - 44132612
Alignment:
Q  211 atagctcagctggcagaaacatgcattgttatatgtagagg 251  Q
    ||||||||| ||||||| ||||||||||||||||| |||||    
T  44132652 atagctcagttggcagagacatgcattgttatatgcagagg 44132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 67165 - 67268
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| ||| ||  | |||||||||||||||||| ||||  ||||| ||||  |||||||||||||| |||||||||||||  |||| ||||||    
T  67165 gcatagctcagttgggagggatatgcattgttatatgtaggggctggggttcgaaccctggacaccccacttaatcaccttgaaaaaagtgaattctagc 67264  T
Q  309 cact 312  Q
    ||||    
T  67265 cact 67268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 40160739 - 40160842
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||  ||||||  |||||||||||||||||  | ||||  ||||  |||| ||||||||||||||||||||||| |||||| |||| ||||||    
T  40160739 gcatagctcaattggcagggacatgcattgttatatgccggggctggggtttgaaccccggacaccccacttattcacctttaaaaaggtgaattctagc 40160838  T
Q  309 cact 312  Q
    ||||    
T  40160839 cact 40160842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 19137623 - 19137709
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||||||||| |||||| |||||||||||||||||| || |||   ||||| |||| | ||||||||| |||||| ||||||||||    
T  19137623 gcatagctcagttggcaggaacatgcattgttatatgcaggggccgaggttcgaaccccagacaccccatttattctccttgaaaaa 19137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 28951870 - 28951956
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||| ||||| ||||||| ||||||||| ||||||| || ||  | ||||| |||| || ||||||||||||||||||||||||||    
T  28951870 gcataactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaa 28951956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 2903732 - 2903813
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    |||| |||||||||||| || ||||  |||||||||| |||| |||| |||||||||||||||||||| || | ||||||||    
T  2903732 acatacattgttatatgcaggggctggggttcaaaccccggatacccaacttattcaccttgaaaaaggtggattctagcca 2903813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 31917958 - 31917873
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaa 294  Q
    ||||||||||| | | || ||||||||||||||||||||||||    | ||| ||| |||||||||||||||||||||||| ||||    
T  31917958 gcatagctcagtttgtaggaacatgcattgttatatgtagaggtcgggcttcgaacttcggacaccccacttattcaccttaaaaa 31917873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 21249080 - 21248978
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| || |||| ||||| ||| ||||||| || |||   ||||| ||||  | ||||||||||||||||||||||||||| |||| ||||||    
T  21249080 gcatagctcagttgacagagacatg-attattatatgcaggggccggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaattctagc 21248982  T
Q  309 cact 312  Q
    ||||    
T  21248981 cact 21248978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 22432986 - 22432915
Alignment:
Q  225 agaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||||| ||||||||||||| || |||   |||||||||| ||||||| |||||||||||| |||||||||    
T  22432986 agaaacacgcattgttatatgcaggggccggggttcaaaccccggacactccacttattcactttgaaaaag 22432915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 24130563 - 24130666
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| ||||| ||||||  |||| |||||||||||| || ||    ||||  |||| |||||||||||||||||||||||||||||| ||||  |||||    
T  24130563 gcataactcagttggcagggacatacattgttatatgcaggggacggggtttgaaccccggacaccccacttattcaccttgaaaaagttgaatactagc 24130662  T
Q  309 cact 312  Q
    ||||    
T  24130663 cact 24130666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 31680736 - 31680838
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||||||||| | | ||  ||||||||||||||| ||||||| |  ||||  ||| |||||||||||||||||||||||| |||||| |||| | ||||    
T  31680736 gcatagctcagtttgtagggacatgcattgttatacgtagaggttggggtttgaacttcggacaccccacttattcacctt-aaaaaggtgaattttagc 31680834  T
Q  309 cact 312  Q
    ||||    
T  31680835 cact 31680838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 34407175 - 34407080
Alignment:
Q  215 ctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||| ||||||  ||||||||| ||||||| || || |  ||||| |||| | ||||||||||||||||| |||||||| |||||| ||||||||    
T  34407175 ctcagttggcagggacatgcattattatatgcaggggttggggttcgaaccccagacaccccacttattcatcttgaaaatgatgaattctagcca 34407080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 24160619 - 24160517
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagc 308  Q
    ||||| ||||| ||||||| ||||||| ||||||||| || ||    ||||| |||| ||||||| |||||||||||| || |||||| |||| ||||||    
T  24160619 gcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaaccccggacactccacttattcactttcaaaaagttgaattctagc 24160520  T
Q  309 cac 311  Q
    |||    
T  24160519 cac 24160517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 33533207 - 33533293
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaa 295  Q
    ||||| ||||| ||||||| |||||||||||||||||||| || |  ||||| ||||   |||| |||||||||||||||| |||||    
T  33533207 gcataactcagttggcagagacatgcattgttatatgtagtggttggggttcgaaccatagacatcccacttattcaccttaaaaaa 33533293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 4045705 - 4045628
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||| || ||    ||||| ||| |||||||||||||||||||| |||||||||| |||| ||||    
T  4045705 acatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattcta 4045628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 11668341 - 11668276
Alignment:
Q  228 aacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaa 293  Q
    |||||| ||||||||||| ||| ||   ||||| |||| |||||||||||||||||||||||||||    
T  11668341 aacatgtattgttatatgcagaagccggggttcgaaccacggacaccccacttattcaccttgaaa 11668276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 32080106 - 32080159
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcc 309  Q
    ||||| |||| || ||||||||||||||||||||||||||| |||| |||||||    
T  32080106 ggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaattctagcc 32080159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 50724393 - 50724472
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||| ||||||| || || |  ||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  50724393 atgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacctt-aaaaag-tgaattctagccact 50724472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 50788455 - 50788376
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||| ||||||| || || |  ||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  50788455 atgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacctt-aaaaag-tgaattctagccact 50788376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 33206761 - 33206841
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||||||| ||| || |  ||||||| ||||||| || ||||  ||||| |||| |||||||||||||||||||||||    
T  33206761 gcatagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcacctt 33206841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Original strand, 17262281 - 17262320
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  17262281 cggacaccccacttattcaccttgaaaaaggtgaattcta 17262320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 31108851 - 31108764
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaag 296  Q
    ||||| ||||| ||||||  ||||||||  ||||||| || ||||  ||||| ||||   ||||||||||||||||||||||||||||    
T  31108851 gcataactcagttggcagggacatgcataattatatgcaggggctggggttcgaacccgagacaccccacttattcaccttgaaaaag 31108764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 42665958 - 42665919
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  42665958 cggacaccccacttattcaccttgaaaaaaatgaattcta 42665919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 49299310 - 49299228
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||  ||||||||| |||||  ||||| |||| | ||||| ||||||||||||||||| |||| |||| ||||||||||    
T  49299310 acatgcataattatatgtaaaggctggggttcgaacc-cagacactccacttattcaccttgagaaagctgaattctagccact 49299228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 16119941 - 16119880
Alignment:
Q  239 ttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaa 301  Q
    |||||||||| || ||  ||||||||||||||||||| | ||||||||||| |||||||||||    
T  16119941 ttatatgtaggggttagagttcaaacctcggacaccctatttattcacctt-aaaaagatgaa 16119880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 41767860 - 41767779
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    |||||| |||| |||||| |||| |||||||||||||| || ||  || |||| || ||||| |||||||||||||||||||    
T  41767860 gcatagttcagttggcaggaacaatgcattgttatatgcaggggtcattgttcgaatctcgggcaccccacttattcacctt 41767779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 47191376 - 47191478
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctag 307  Q
    ||||||||||| ||||||  ||| |||||| ||||||| || ||||   |||| |||| || ||||||||||||||||||||  | |||||||| |||||    
T  47191376 gcatagctcagttggcagggacaatgcattattatatgcaggggctggagttcgaaccccgaacaccccacttattcacctt--ataagatgaattctag 47191473  T
Q  308 ccact 312  Q
    |||||    
T  47191474 ccact 47191478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 49639032 - 49639113
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttg 290  Q
    ||||||||||| ||| || |  ||||||| |||||||||| |||   ||||| |||| || |||||||||||||||||||||    
T  49639032 gcatagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccgaacaccccacttattcaccttg 49639113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 53467999 - 53468032
Alignment:
Q  256 ggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||| ||||||||||||||||||||||||||||    
T  53467999 ggttcgaacctcggacaccccacttattcacctt 53468032  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 6951829 - 6951781
Alignment:
Q  262 aacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||||||||||| |||||||||||||| ||||| || || ||||||||    
T  6951829 aacctcggacaccgcacttattcaccttaaaaaaaataaattctagcca 6951781  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 16874281 - 16874213
Alignment:
Q  209 gcatagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacacccca 277  Q
    ||||||||||| ||||||  ||||||||||||||||| || |||   ||||| |||| |||||||||||    
T  16874281 gcatagctcagttggcagggacatgcattgttatatgcaggggccgaggttcgaaccgcggacacccca 16874213  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 24890097 - 24890149
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccactta 281  Q
    |||||||||||||||||||| || |  ||||| ||||||||| ||||||||||    
T  24890097 acatgcattgttatatgtaggggttggggttcgaacctcggaaaccccactta 24890149  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 40996882 - 40996950
Alignment:
Q  221 tggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcacctt 289  Q
    ||||||| | ||||||||||||||| || ||  || |||| || ||||| |||||||||||||||||||    
T  40996882 tggcagagatatgcattgttatatgcagggggcatagttcgaatctcgggcaccccacttattcacctt 40996950  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 51017851 - 51017895
Alignment:
Q  267 cggacaccccacttattcaccttgaaaaagatgaactctagccac 311  Q
    |||||||||||||||||||| ||||||||  |||| |||||||||    
T  51017851 cggacaccccacttattcactttgaaaaaagtgaattctagccac 51017895  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 440405 - 440506
Alignment:
Q  211 atagctcagctggcagaaacatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagcca 310  Q
    ||||||||| |||||| |||||||||| |||||||||| |||   ||||| |  | || |||||||||||||||||||| |||||| |||| |||| |||    
T  440405 atagctcagttggcaggaacatgcattattatatgtaggggccggggttcgactcccgaacaccccacttattcaccttaaaaaaggtgaattctaacca 440504  T
Q  311 ct 312  Q
    ||    
T  440505 ct 440506  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 451444 - 451365
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    |||||||||||||||||| |||   ||||| |||  ||||||||||||||||||| |||  | |||||||| ||||||||||    
T  451444 atgcattgttatatgtaggggccggggttcgaactccggacaccccacttattcatctt--ataagatgaattctagccact 451365  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 108452 - 108375
Alignment:
Q  210 catagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcac 286  Q
    |||||||||  |||||| |||| |||||| ||||||| || ||||  |||||||||| ||||||||||||||||||||    
T  108452 catagctcaattggcaggaacaatgcattattatatgcaggggctgaggttcaaaccccggacaccccacttattcac 108375  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 7082 - 7163
Alignment:
Q  231 atgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactctagccact 312  Q
    ||||||||||||||| || ||  | | ||| ||||||  |||| ||||||||||| |||||||||| |||| ||||||||||    
T  7082 atgcattgttatatgcaggggtcaggtttcgaacctcatacactccacttattcatcttgaaaaaggtgaattctagccact 7163  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 25029 - 25106
Alignment:
Q  209 gcatagctcagctggcagaaaca-tgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattca 285  Q
    ||||||||||| ||||||  ||| |||||| ||||||| || ||||  ||||| |||| |||||||||||||||||||    
T  25029 gcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattca 25106  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 19466 - 19389
Alignment:
Q  229 acatgcattgttatatgtagaggctatggttcaaacctcggacaccccacttattcaccttgaaaaagatgaactcta 306  Q
    |||||||||||||||||||| || |  || |  ||||||||||||| || |||||||| ||||||||| |||| ||||    
T  19466 acatgcattgttatatgtaggggttggggattgaacctcggacacctcatttattcactttgaaaaaggtgaattcta 19389  T

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