View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_15 (Length: 384)
Name: NF18928_low_15
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 373
Target Start/End: Complemental strand, 40153610 - 40153258
Alignment:
| Q |
21 |
tcctgttgtttggctgacgtatatgaatattattttcctcttagaatgcaatttcatttttcttatcttttctttggtgttctgatgcagcatgtcgagt |
120 |
Q |
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| T |
40153610 |
tcctgttgtttggctgacgtatatgaatattattttcctcttagaatgcaatttcatttttcttatcttttctttggtgttctgatgcagcatgtcgagt |
40153511 |
T |
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| Q |
121 |
ggatttattggtacttcgtatatacnnnnnnnggctgctttattgggcattggtgatggagttctaatgacgcagctcaatgctttgctaggaatgctat |
220 |
Q |
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| T |
40153510 |
ggatttattggtactttgtatatactttttttggctgctttattgggcattggtgatggagttctaatgacgcagctcaatgctttgctaggaatgctat |
40153411 |
T |
|
| Q |
221 |
ttaaacatgacatggtacataaatgccatctacccttttatatcgctgaaatatactattccaaaattcaaattatgccttactaacatgctaccttgct |
320 |
Q |
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| T |
40153410 |
ttaaacatgacatggtacataaatgccatctacccttttatatcgctgaaatatactattccaaaattcaaattatgccttactaacatgctaccttgct |
40153311 |
T |
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| Q |
321 |
tctctattacttttttgaggtcgccttttttgttaattattttgctagttcat |
373 |
Q |
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| T |
40153310 |
tctctattacttttttgaggttgccttttttgttaattattttgctagttcat |
40153258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 40146969 - 40146754
Alignment:
| Q |
27 |
tgtttggctgacgtatatgaatattattttcctcttagaatgcaatttcatttttcttatcttttctttggtgtt-ctgatgcagcatgtcgagtggatt |
125 |
Q |
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| T |
40146969 |
tgttaggctgacgtttatggatattattttcccc-----atgtaatttcattttacctatattttctttggcactactgatgcagcatatctagcggatt |
40146875 |
T |
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| Q |
126 |
tattggtacttcgtatatacnnnnnnnggctgctttattgggcattggtgatggagttctaatgacgcagctcaatgctttgctaggaatgctatttaaa |
225 |
Q |
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| | |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
40146874 |
tctcggtacttcatatatactctttctggctgctttattgggcatcggtgatggagttctaatgacacagctcaatgctttgctaggaatactatttaag |
40146775 |
T |
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| Q |
226 |
catgacatggtacataaatgc |
246 |
Q |
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| T |
40146774 |
catgacatggtacgtaaatgc |
40146754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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