View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_16 (Length: 375)
Name: NF18928_low_16
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 30242310 - 30242655
Alignment:
| Q |
17 |
agacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaactttttctcttagcatgaagtttctttcgataaagaaaacgg |
116 |
Q |
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| T |
30242310 |
agacctaaccataaacaattacgaatgctgttccttaaaccatagatgaaatataaaactttttctcttagcatgaagtttctttcgataaagaaaacgg |
30242409 |
T |
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| Q |
117 |
tgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30242410 |
tgaaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgt |
30242509 |
T |
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| Q |
217 |
tattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaatagtatccattcaaaaacaagtctccactttactttaaannnnnnnnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30242510 |
tattcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaataatatccattcaaaaacaagtctccactttactttaaattttttcttt |
30242609 |
T |
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| Q |
317 |
nngttgcgtgacttcgaatcacgcaaaacctcttcatcctcatcct |
362 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
30242610 |
ttgttgtgtgacttcgaatcacgcaaaacctcttcgtcctcatcct |
30242655 |
T |
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