View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18928_low_17 (Length: 372)

Name: NF18928_low_17
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18928_low_17
NF18928_low_17
[»] chr3 (10 HSPs)
chr3 (27-319)||(2820903-2821195)
chr3 (114-309)||(2809624-2809828)
chr3 (97-170)||(2761632-2761705)
chr3 (260-301)||(2799725-2799766)
chr3 (137-190)||(2793422-2793475)
chr3 (265-314)||(2761565-2761614)
chr3 (260-319)||(2836337-2836396)
chr3 (119-189)||(2773460-2773530)
chr3 (141-211)||(2771531-2771605)
chr3 (260-308)||(2792671-2792719)
[»] chr1 (1 HSPs)
chr1 (97-192)||(11114997-11115092)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 2821195 - 2820903
Alignment:
Q  27 gaagccagagtcgctcagtgaacgggatccactttttgctgattattgcaggatgagtggaaatattttactttgagctgtatcgtggagaaccaaattt 126  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  2821195 gaagccacagtcgctcagtgaatgggatccactttttgctgattattgcaggatgagaggaaatattttactttgagctgtatcgtggagaaccaaattg 2821096  T
Q  127 ctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaacgaaacatat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2821095 ctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaatgaaacatat 2820996  T
Q  227 aaaataaaacgtcgatataaaactgaatgctttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac 319  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2820995 aaaataaaacgttgatataaaactgaatgctttataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagcttgcaagac 2820903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 2809828 - 2809624
Alignment:
Q  114 gagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaaga 213  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      ||| |||||||||||||| |||||||||||||||| |    
T  2809828 gagaaccaaatttctgtccgcattgacacaaaaaacaatcaagtcagttatctcatac-----tcagcttaattaaacacattaaatctttttcaaaaca 2809734  T
Q  214 aaacgaaacatataaaataaaacgtcgatataaaactgaatgct--------------ttataagagaagcattgcatgatcagaggaaaggtaccttca 299  Q
    ||| |||||| || |||| |||||||| ||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||    
T  2809733 aaatgaaacacattaaatgaaacgtcgttataaaactgaatgctagtacaagaatgctttataagagaagcattgcatgatcagaggaaaggtaccttca 2809634  T
Q  300 tattttgaag 309  Q
    ||||||||||    
T  2809633 tattttgaag 2809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 2761705 - 2761632
Alignment:
Q  97 ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcata 170  Q
    |||||||||||||  |||||||||||||||||| || ||  ||||||||||| |||||||||||||||||||||    
T  2761705 ctttgagctgtattatggagaaccaaatttctggccacaccgacacaagaaaaaatcaagtcagttatctcata 2761632  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 2799766 - 2799725
Alignment:
Q  260 ataagagaagcattgcatgatcagaggaaaggtaccttcata 301  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2799766 ataagagaagcattgcatgatcagaggaaaggtaccttcata 2799725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 2793475 - 2793422
Alignment:
Q  137 tgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaa 190  Q
    |||||| |||||||||  |||||||||||||||| |||||||||||||||||||    
T  2793475 tgacacgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaa 2793422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 2761614 - 2761565
Alignment:
Q  265 agaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgc 314  Q
    ||||||||| ||||||| || |||||||||||||||||||||||| ||||    
T  2761614 agaagcattacatgatcggatgaaaggtaccttcatattttgaagcttgc 2761565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 2836337 - 2836396
Alignment:
Q  260 ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaagtttgcaagac 319  Q
    ||||||||||||||||  |||||||||| |||||||||| | |||||||| |||| ||||    
T  2836337 ataagagaagcattgcgcgatcagaggagaggtaccttcttgttttgaagcttgctagac 2836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 2773530 - 2773460
Alignment:
Q  119 ccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaa 189  Q
    ||||||| |||||| ||||| |||||||||||||| | |||| ||||||||| | ||| ||| ||||||||    
T  2773530 ccaaattgctgtccacattggcacaagaaacaatcgactcaggtatctcatacatttgccaatttaattaa 2773460  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 2771605 - 2771531
Alignment:
Q  141 acaagaaacaatcaagtcagttatctcatagaattgtc----aacttaattaaacacactaaatctttttcaaaa 211  Q
    ||||||||||||  | |||||||||||||| |||||||    |||||||||||||||   |||||||||||||||    
T  2771605 acaagaaacaatttactcagttatctcatacaattgtcggtcaacttaattaaacacgtcaaatctttttcaaaa 2771531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 2792719 - 2792671
Alignment:
Q  260 ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaa 308  Q
    ||||||||||  ||| |||||||||||||||| |||||||| |||||||    
T  2792719 ataagagaagtgttgaatgatcagaggaaaggcaccttcatcttttgaa 2792671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 11114997 - 11115092
Alignment:
Q  97 ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaaca 192  Q
    |||||||| ||||| | ||||||| || ||||||||  ||| | ||||||||||||  |||||||||||||||| ||||||||||| |||||||||    
T  11114997 ctttgagcggtatcattgagaacccaaattctgtccaaatttatacaagaaacaattgagtcagttatctcatacaattgtcaactaaattaaaca 11115092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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