View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_18 (Length: 372)
Name: NF18928_low_18
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 208 - 353
Target Start/End: Original strand, 19974357 - 19974507
Alignment:
| Q |
208 |
aggggaattaaatagacaaa-----agcacacgaaacatacaaggttgcatcattatgatgacttgaaaaatccttgagcttagcttgattatcggcagt |
302 |
Q |
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| T |
19974357 |
aggggaattaaatagacaaactgtgagcacacgatacatacaaggttacatcattatgatgacttgaaaaatccttgagcttagcctgattatcggcagt |
19974456 |
T |
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| Q |
303 |
attagatgcatgaacagcagaacctagacaaaccgcaaccaaaaaacaacc |
353 |
Q |
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| T |
19974457 |
attagatgcatgaacagccgagcctagacaaaccgcaaccaaaaagcaacc |
19974507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 19974190 - 19974300
Alignment:
| Q |
76 |
atagtagcaatctatgatagttcccgaagtagcaattcctatttttgtttctaaacagtttgtaaataagggacttttctttctttcttttaaaaggaaa |
175 |
Q |
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| T |
19974190 |
atagtagctagctatgatagttcccaaagtggcaattcctatttttgtttctaaaaagtgtgtaaataagggacttttctttctttcttttaaaaggaaa |
19974289 |
T |
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| Q |
176 |
aggcataaggt |
186 |
Q |
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| T |
19974290 |
aggcataaggt |
19974300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 19622187 - 19622110
Alignment:
| Q |
280 |
agcttagcttgattatcggcagtattagatgcatgaacagcagaacctagacaaaccgcaaccaaaaaacaaccaact |
357 |
Q |
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| T |
19622187 |
agcttagcctgattatcagcagtattagatgaatgaacagcagagcctaaacaaactgcaactaaaaagcaaccaact |
19622110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 19973949 - 19973996
Alignment:
| Q |
4 |
atcaagaaattaaaatcaccaaagcaactgaaattcagaactagatga |
51 |
Q |
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| T |
19973949 |
atcaagaaactaaaatcaccaaagcaactgaaattcagaactagatga |
19973996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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