View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_20 (Length: 344)
Name: NF18928_low_20
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 1965710 - 1965397
Alignment:
| Q |
13 |
aatattcacttgtgtaaatcaattattcaagcaagttacacatccatggtcaaccaatacttaaaagtcattcgaaagtctaagaatgtgtaatgtcaac |
112 |
Q |
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| T |
1965710 |
aatattcacttgtgtaaatcaattattcaagcaagttacacatccatggtcaaccaatacttaaaagtcattcgaaagtctaagaatgtgtaatgtcaac |
1965611 |
T |
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| Q |
113 |
tatcgaacctagaagctcacagtccttctcgatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaact |
212 |
Q |
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| T |
1965610 |
tatcgaacctagaagctcacagtccttcttgatgtaatatttgagacaatgatctgatcatgtctgtttgacaaaaacaagagaagcgtgcctcaaaact |
1965511 |
T |
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| Q |
213 |
tgactcatttgttttcctttatttttgtcaaaccaggttcgatcaagtcaccgtctcaagctcaaggccgaaaagaaccatgagcttatacttctagaag |
312 |
Q |
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| T |
1965510 |
cgactcatttgttttcctttatttttgtcaaatcaggttcgatcaagtcaccatctcaagctcaaggccgaaaagaaccatgagcttatacttctagaag |
1965411 |
T |
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| Q |
313 |
gcgatctcggtcat |
326 |
Q |
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||||||||||||| |
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| T |
1965410 |
acgatctcggtcat |
1965397 |
T |
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