View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_25 (Length: 303)
Name: NF18928_low_25
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 16100769 - 16101057
Alignment:
| Q |
1 |
catcttcttcaaaaagtctcgcctagctttcaatattatttcgaaggagaattagaatgcgagaatttttaagcataaggttgaccatctcaattcctta |
100 |
Q |
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| T |
16100769 |
catcttcttcaaaaagtctcgcctagctttcaatattatttggaaggagaa---gaatgcgaggatttttaagcataaggctgaccatctcaattcctta |
16100865 |
T |
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| Q |
101 |
acttaaaaggctaaagttcagacatgttggttgttaaaatcgtattatgtatagtttgattttgattacctcacttagaggttacattctatgttgtcag |
200 |
Q |
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| T |
16100866 |
acttaaaaggctaaagttcagacatgttggttgttaaaatcgtattatgtatagtttgattttgattac-tcacttagaggttacattctatgttgtcag |
16100964 |
T |
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| Q |
201 |
ttgtgtttaaaggcaatttcctaatttttattttctttagctgctctcgcaactttggtgtgcaatgtaattttggattgtaaactctctctg |
293 |
Q |
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| T |
16100965 |
ttgtgtttaaaggcaatttcttaatttttattttctttagctgctctcgcaactttggtgtgtaatgtaattttggattgtaaactctctctg |
16101057 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 16253532 - 16253574
Alignment:
| Q |
134 |
ttaaaatcgtattatgtatagtttgattttgattacctcactt |
176 |
Q |
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| T |
16253532 |
ttaaaatcgaattatgtattgtttgattttgattacctcactt |
16253574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 15224500 - 15224556
Alignment:
| Q |
127 |
ttggttgttaaaatcgtattatgtatagtttgattttgattacctcacttagaggtt |
183 |
Q |
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| T |
15224500 |
ttggtggttaaaatcatattattttttgtttgattttgattaccccacttagaggtt |
15224556 |
T |
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