View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_29 (Length: 283)
Name: NF18928_low_29
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 45607449 - 45607197
Alignment:
| Q |
13 |
aatatcacaa-catcaattgtgtctccatttgcctacattttgccataatataaaatttgcagtgcaatcgcaatcacaatttaaaactacgcttataat |
111 |
Q |
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| T |
45607449 |
aatatcacaaacatcaattatgtcttcatttgcctacattttgccataatataaaattcgcagtgcaatcgcaatcacaatttaaaactacgcttataag |
45607350 |
T |
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| Q |
112 |
atttaaggcttataggagtaaatgcatggtgttatatggggtgtagtaattgtaac--cnnnnnnntatggggtgtagtaaaatgaacagttttacactt |
209 |
Q |
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| T |
45607349 |
atttaaggcttataggagtaaatgcatggtattatatggggtgtagtaattgtaacaaaaaaaaaatatggggtgtagtaaaatgaacagttttacactt |
45607250 |
T |
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| Q |
210 |
gaccaacnnnnnnnnttaacagttttacatcttttccttagttttaatatgtt |
262 |
Q |
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| T |
45607249 |
gaccaacaaaaaaaattaacagttttacatcttttccttagttttaatatgtt |
45607197 |
T |
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