View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_3 (Length: 618)
Name: NF18928_low_3
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 27 - 604
Target Start/End: Original strand, 31652885 - 31653459
Alignment:
| Q |
27 |
acgaaggttaataatcaagttatacatcannnnnnnn-agaggaagttatatatacatcatttgtctacctataaaataatcgtatggcaaatcacatta |
125 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652885 |
acgaaggttaataatcaagttatacatcatttttttttagagaaagttatatatacatcatttgtctacctataaaataatcgtatggcaaatcacatta |
31652984 |
T |
|
| Q |
126 |
agaatgtaaacacatctttactatgaaatattaagtgcatagcagattacaaaatggccaaattgcttgatagatacaatgcaatagccttctgcataat |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31652985 |
agaatgtaaacacatctttactatgaaatattaagtgcatagcagattacaaattggccaaattgcttgatagatacaatgcaatagccttctgcataat |
31653084 |
T |
|
| Q |
226 |
tcaatttgctttctctatgaatttagtacatcc----accttctggtttctgtatttttctcctgcattagtaatttaatatgcttgtgtatggattcat |
321 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31653085 |
tcaatttgctttctctatgaatttagtacatccagcaaccttctggtttctctatttttctcctgcattagtaatttaatatgcttgtttatggattcat |
31653184 |
T |
|
| Q |
322 |
-aaaagaaagccagaagcaaaagcagagcaaaatgaatgagtgcttaggttctacaatataatttcactgttgttacggttgttgttcaaaatccacatt |
420 |
Q |
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|||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
31653185 |
aaaaaaaaagccagaagcaa---------aaaatgaatgagtgcttgggttctacaatat-atttcactgttgttactgttgttgttcaaaatccacatt |
31653274 |
T |
|
| Q |
421 |
gtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaaggctccaccaatttccatggagcaaataggttgtgacc-aaagtgtccgaac |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31653275 |
gtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaaggctccaccaatttccatggagcaaataggttgtgaccaaaagtgtccgaac |
31653374 |
T |
|
| Q |
520 |
aagcacgaatcttccttcatcgtctcttaaacacatgtcaaaccttgtacaattcagcgtggtggagaaagaagcgtcaatgttg |
604 |
Q |
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| T |
31653375 |
aagcacgaatcttccttcatcgtctcttaaacacatgtctaaccctgtacaattcagcgtgatggagaaagaagcgtcaatgttg |
31653459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 407 - 604
Target Start/End: Complemental strand, 8142416 - 8142221
Alignment:
| Q |
407 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaaggctccaccaatttccatggagcaaataggttgtgacc |
506 |
Q |
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| T |
8142416 |
tcaaaatccacattttgaagttgtagatcatgcacctaattaatggcatgaagcaatcccaaggcttcaccaatttcc--ggagtaaataggttgtgacc |
8142319 |
T |
|
| Q |
507 |
aaagtgtccgaacaagcacgaatcttccttcatcgtctcttaaacacatgtcaaaccttgtacaattcagcgtggtggagaaagaagcgtcaatgttg |
604 |
Q |
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| T |
8142318 |
aaagtgtctggacaagcatgaatcttccttcatcgtctcttaaacacacgtcaaaccctgtacagttcagcgtagtggagaaagatgctccaatgttg |
8142221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 407 - 514
Target Start/End: Complemental strand, 16151379 - 16151272
Alignment:
| Q |
407 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaaggctccaccaatttccatggagcaaataggttgtgacc |
506 |
Q |
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|||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||| | | | || | |||| ||||||||||| ||||||||| |
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| T |
16151379 |
tcaaaatcaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaaagattctccgacttccgtggagcaaatatgttgtgacc |
16151280 |
T |
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| Q |
507 |
aaagtgtc |
514 |
Q |
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|||||||| |
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| T |
16151279 |
aaagtgtc |
16151272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 512
Target Start/End: Complemental strand, 26224613 - 26224509
Alignment:
| Q |
407 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaaggctccaccaatttccatggagcaaataggttgtgacc |
506 |
Q |
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||||||||||| | ||||| ||||||||| ||||| ||| ||| |||||||||||| | || || ||| |||||||||||||||||||||||||||||| |
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| T |
26224613 |
tcaaaatccacgtggtgaacttgtagatcgtgcacccaat-gatagcatgaagcaatcctaatgccccatcaatttccatggagcaaataggttgtgacc |
26224515 |
T |
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| Q |
507 |
aaagtg |
512 |
Q |
| |
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|||||| |
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| T |
26224514 |
aaagtg |
26224509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 545 - 604
Target Start/End: Complemental strand, 26224469 - 26224410
Alignment:
| Q |
545 |
cttaaacacatgtcaaaccttgtacaattcagcgtggtggagaaagaagcgtcaatgttg |
604 |
Q |
| |
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|||||||||||||||||| ||||||| |||||| ||||||| || ||||| || |||||| |
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| T |
26224469 |
cttaaacacatgtcaaactttgtacagttcagcatggtggaaaaggaagcatcgatgttg |
26224410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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