View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_36 (Length: 254)
Name: NF18928_low_36
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 16578655 - 16578770
Alignment:
| Q |
138 |
taaaataaattaatacaa--tataagataacattgaatgattcgatgaggagtatatattcgaccaaactacgtgagtatcgttttgttgatctaattat |
235 |
Q |
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| T |
16578655 |
taaaataaattaatataaaatatacgataacgttgaacgattcgatgaggagtatatattcaaccaaactacacgagtatcattgcgttgatttaattat |
16578754 |
T |
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| Q |
236 |
atatgagaaatttata |
251 |
Q |
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| T |
16578755 |
acatcagaagtttata |
16578770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 16578508 - 16578622
Alignment:
| Q |
18 |
catgtcgctaaaatttgtgacgagaaaaaccaagagagttttcannnnnnnnnnngttggtaaattaattatatgataaattttgacatacttcgaagtt |
117 |
Q |
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|||||| ||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||| |
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| T |
16578508 |
catgtcactaaattttgtgacgagaaaaaccgagaaagttttcatttttttttt-gttggtaaattaattatatgataaatttttagatactttgaagtt |
16578606 |
T |
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| Q |
118 |
tgattgaatattgata |
133 |
Q |
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| T |
16578607 |
tggttgaatattgata |
16578622 |
T |
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