View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_37 (Length: 251)
Name: NF18928_low_37
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2820576 - 2820816
Alignment:
| Q |
1 |
ctcagtcgcttgaatagagtaaagtatatccgtatagacgaaggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatggggg |
100 |
Q |
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| T |
2820576 |
ctcagtcgcttgaatagagtaaagtatatctgtatagacgaaggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatggagg |
2820675 |
T |
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| Q |
101 |
taccctccggcatcatgttcttgaataatctcaaagctattaacttcaatgaaatgtcgtatgaacttgttgagagtattgaaacagacaaaggaaaaga |
200 |
Q |
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| T |
2820676 |
taccctacggcatcaagtccttgaataatctcaaagctattaacttcagtgaaatggcagatgaattctttgagagtattgatcaaaacaatggaaatga |
2820775 |
T |
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| Q |
201 |
ccactggattatcaagcatgttcctcttgtatcctttcatc |
241 |
Q |
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| T |
2820776 |
ctattggagtatcaagcatgctcctcttgtatcctttcatc |
2820816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2761230 - 2761470
Alignment:
| Q |
1 |
ctcagtcgcttgaatagagtaaagtatatccgtatagacgaaggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatggggg |
100 |
Q |
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| T |
2761230 |
ctcaggcgcttgaatagggtaaattctatccttatagacgaaggaactttgatctctcttgaatatctgaacatggacagaatcccccagctaaaggagg |
2761329 |
T |
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| Q |
101 |
taccctccggcatcatgttcttgaataatctcaaagctattaacttcaatgaaatgtcgtatgaacttgttgagagtattgaaacagacaaaggaaaaga |
200 |
Q |
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| T |
2761330 |
tgccctcaggcatcaggtccttggataaactcaaagatattaacttcactgaaatgccatctgaatttgttgaaagtattgatccagacaaaggaaaaga |
2761429 |
T |
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| Q |
201 |
ccactggattatcaagcatgttcctcttgtatcctttcatc |
241 |
Q |
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| T |
2761430 |
ctacatgattatcaagcatgtccctcttgtatccattcatc |
2761470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2809283 - 2809523
Alignment:
| Q |
1 |
ctcagtcgcttgaatagagtaaagtatatccgtatagacgaaggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatggggg |
100 |
Q |
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||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||| || || |
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| T |
2809283 |
ctcagtcgcttgaatagagtacatactgtccttatagacgaaggaactttgatctctcttgaatatcttaccatggacagaataccccagctgaaggagg |
2809382 |
T |
|
| Q |
101 |
taccctccggcatcatgttcttgaataatctcaaagctattaacttcaatgaaatgtcgtatgaacttgttgagagtattgaaacagacaaaggaaaaga |
200 |
Q |
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| T |
2809383 |
taccctcaggcatcagatccttggataaactcaaagctattaacttcactgaaatgccagctgaatttgttgaaagcgttgatccagacaaaggaaaaga |
2809482 |
T |
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| Q |
201 |
ccactggattatcaagcatgttcctcttgtatcctttcatc |
241 |
Q |
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| T |
2809483 |
ctaccggataatcaagcatgttcctcttgtatccattcatc |
2809523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 2771118 - 2771307
Alignment:
| Q |
43 |
ggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatgggggtaccctccggcatcatgttcttgaataatctcaaagctatta |
142 |
Q |
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|||| |||| ||||||||||| ||||||| || | | ||||||| |||||| || |||||||| ||||||| || || |||| ||||||| |||| |
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| T |
2771118 |
ggaaatttgctctctcttgaacatcttacactggaaaaaatcccccaactgaaggaggtaccctttggcatcaaactcatgcataaactcaaagatattc |
2771217 |
T |
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| Q |
143 |
acttcaatgaaatgtcgtatgaacttgttgagagtattgaaacagacaaaggaaaagaccactggattatcaagcatgttcctcttgtat |
232 |
Q |
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| T |
2771218 |
acatcactgatatgccagctgaatttgttgaaagcattgatccagataaagggcaagactactcgattatcaagcatgttcctcttgtat |
2771307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 2792372 - 2792561
Alignment:
| Q |
43 |
ggaactttgatctctcttgaatatcttaccatgaacagaatccccgaactgatgggggtaccctccggcatcatgttcttgaataatctcaaagctatta |
142 |
Q |
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||||| ||| ||||||| ||| ||||||| || | | ||||||| |||||| || ||||||||| ||||||| || || |||| ||||||| |||| |
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| T |
2792372 |
ggaaccttgctctctctcgaacatcttactctggaaaaaatcccccaactgaaggcggtaccctctggcatcaaactcatgcataaactcaaagatattc |
2792471 |
T |
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| Q |
143 |
acttcaatgaaatgtcgtatgaacttgttgagagtattgaaacagacaaaggaaaagaccactggattatcaagcatgttcctcttgtat |
232 |
Q |
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| T |
2792472 |
acgtcactgatatgccagctgaatttgttgaaagctttgatccagataaagggcaagactactcgattatcaagcatgttcctcttgtat |
2792561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 2853758 - 2853706
Alignment:
| Q |
178 |
attgaaacagacaaaggaaaagaccactggattatcaagcatgttcctcttgt |
230 |
Q |
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| T |
2853758 |
attgaaccagacaaaggacacagctactggattatcaagcatgttcctcttgt |
2853706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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