View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_39 (Length: 250)
Name: NF18928_low_39
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_39 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 65381 - 65140
Alignment:
| Q |
1 |
tcttttgaaataatctgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttct |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65381 |
tcttttgaaatgatctgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttct |
65282 |
T |
|
| Q |
101 |
ctgcgataaatatttgggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaatt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
65281 |
ctgcgataaatatttgggacccaaccaactcatcctgaaatatcctgaacacttttcttgtataaatttttgaagcctcttcttccatgggatataaagt |
65182 |
T |
|
| Q |
201 |
acgtagaagtggttttgaattccttgttttgacattcttctc |
242 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
65181 |
acgtagaagtggttttgaattccttgtcttgacattcttctc |
65140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 22640013 - 22639775
Alignment:
| Q |
7 |
gaaataatctgaaaagtcacatgatagttaggttttt---ctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttctctg |
103 |
Q |
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||||| || ||||||||||||| ||| ||||||||| |||||||||| ||||||| |||||||||||||| ||| |||| | || ||||| || |
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| T |
22640013 |
gaaatgatatgaaaagtcacatagtagctaggttttttttctttgtaaatctcatgaaccttgtatgtggaaaaatcacttgaaaaatcaattttctatg |
22639914 |
T |
|
| Q |
104 |
cgataaatatttgggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaattacg |
203 |
Q |
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| T |
22639913 |
caataaactttcgagaaccaactaactcatcctgaaaagttctaaataactttcttgtatagaattttgaagcttcttcttccataggatataaagttcg |
22639814 |
T |
|
| Q |
204 |
tagaagtggttttgaattccttgttttgacattcttctc |
242 |
Q |
| |
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| || |||||||||||| |||| |||| | ||||||| |
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| T |
22639813 |
caaaaatggttttgaattgattgtcttgaaagtcttctc |
22639775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 51167379 - 51167137
Alignment:
| Q |
1 |
tcttttgaaataatctgaaaagtcacatgatagttaggttttt-ctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttc |
99 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51167379 |
tcttttgaaatgatctgaaaagtcacatgacagttaggttttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttc |
51167280 |
T |
|
| Q |
100 |
tctgcgataaatatttgggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaat |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51167279 |
tctgcgataaatatttgggacccaaccaactcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttattccatgggatataaag |
51167180 |
T |
|
| Q |
200 |
tacgtagaagtggttttgaattccttgttttgacattcttctc |
242 |
Q |
| |
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|||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
51167179 |
tacgcaaaagtggttttgaattccttgtcttgacattcttctc |
51167137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 224 - 1
Alignment:
| Q |
16 |
tgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttctctgcgataaatattt |
115 |
Q |
| |
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|||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||| |
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| T |
224 |
tgaaaagtcacatgatggttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaacagaaaattcaactttctctgcgataaatattt |
125 |
T |
|
| Q |
116 |
gggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaattacgtagaagtggttt |
215 |
Q |
| |
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|||| ||||||||| |||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||||| | || | ||||||||| |
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| T |
124 |
gggatccaaccaactcatcctagaatatcttgaacacttttcgtgtataaatttttgaagcctcttcttccataggatataaagtgcgcaaaagtggttt |
25 |
T |
|
| Q |
216 |
tgaattccttgttttgacattctt |
239 |
Q |
| |
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|||||||||||| || |||||||| |
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| T |
24 |
tgaattccttgtcttaacattctt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 48775873 - 48775648
Alignment:
| Q |
16 |
tgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttctctgcgataaatattt |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | || |||| | ||||||||||||||||||||||| |
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| T |
48775873 |
tgaaaaatcacatgatagttaggtttttgtttgtaaatttcatgaatcttgtatgtggaa-cttgaacagaaaattcaactttctctgcgataaatattt |
48775775 |
T |
|
| Q |
116 |
gggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaattacgtagaagtggttt |
215 |
Q |
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|||| ||||||||| ||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||||| | || | ||||||||| |
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| T |
48775774 |
gggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttcttccataggatataaagtgcgcaaaagtggttt |
48775675 |
T |
|
| Q |
216 |
tgaattccttgttttgacattcttctc |
242 |
Q |
| |
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|||||||||||| || ||||||||||| |
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| T |
48775674 |
tgaattccttgtcttaacattcttctc |
48775648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19330277 - 19330032
Alignment:
| Q |
1 |
tcttttgaaataatctgaaaagtcacatgata--gttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaacttt |
98 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||||||| || ||| |||||||||||||| ||||||||| || || | | |||| | |
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| T |
19330277 |
tcttttgaaatgatatgaaaagtcacatgatatagttaggtttttctttgccaacttcgtgaatcttgtatgtagaaacttcaacagaagattcaactct |
19330178 |
T |
|
| Q |
99 |
ctctgcgataaatatttgggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctct----tcttccatgggata |
194 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| | || |||||||| |||||||| | ||| |
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| T |
19330177 |
ctctgtgataaatatttgggatccaaccaactcatcctgaaatatcttgaacacttttcttgtataaactcttgaagcctcttctttcttccatagaata |
19330078 |
T |
|
| Q |
195 |
taaattacgtagaagtggttttgaattccttgttttgacattcttc |
240 |
Q |
| |
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|||| ||| | ||||||||||||||||||||| |||||||||||| |
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|
| T |
19330077 |
taaagtacacaaaagtggttttgaattccttgtcttgacattcttc |
19330032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 44884679 - 44884897
Alignment:
| Q |
16 |
tgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatcaaaaaacttaactttctctgcgataaatattt |
115 |
Q |
| |
|
||||||| |||||||||||| || || ||||||||||||||||||| |||||||| | ||||||||| |||| | ||||||||| | | |||| |||| |
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| T |
44884679 |
tgaaaagccacatgatagtttggcttctctttgtaaatttcatgaactttgtatgttgccacttcatcagaaaattcaactttctcggtggtaaacattt |
44884778 |
T |
|
| Q |
116 |
gggacccaaccaacgcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttcttccatgggatataaattacgtagaagtggttt |
215 |
Q |
| |
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| || ||||||||| |||| ||||||||| |||| ||||| ||||||||||||| |||| ||||||||||||||||||||| | || | ||||||||| |
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|
| T |
44884779 |
gagagccaaccaactcatcttgaaatatctcaaacaattttcctgtataaatttttgaagcttcttcttccatgggatataaagttcgcaaaagtggttt |
44884878 |
T |
|
| Q |
216 |
tgaattccttgttttgaca |
234 |
Q |
| |
|
||||||| |||| |||||| |
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|
| T |
44884879 |
tgaattcattgtcttgaca |
44884897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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