View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_4 (Length: 573)
Name: NF18928_low_4
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 124 - 565
Target Start/End: Complemental strand, 28095108 - 28094667
Alignment:
| Q |
124 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28095108 |
gcttaggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgt |
28095009 |
T |
|
| Q |
224 |
ttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatctctcgtcctttcgcacaatgccaaaccatatccatctataatcagctt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28095008 |
ttggcctggaacacatgattctgcaacggacaaaatcggcataccaggaatctctcgtcctttcgcacaatgccaaaccttatccatctataatcagctt |
28094909 |
T |
|
| Q |
324 |
gtaagaggaacacgagtgttcgacattcgcgtgcaagaggatcgaagagtatgtcacggaattctcctcacgtacagcgtagacgttgtcataaaagaca |
423 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094908 |
gtaagaggaacacgggtgttcgacattcgcgtgcaagaggatcgaagagtatgtcacggaattctcctcacgtacagcgtagacgttgtcataaaagaca |
28094809 |
T |
|
| Q |
424 |
taaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcga |
523 |
Q |
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| T |
28094808 |
taaaaaagttcttatcagaaaccgtatccgaaatcataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcga |
28094709 |
T |
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| Q |
524 |
agaaaacttaggcgagtacttggttcaccaagatgatgatgt |
565 |
Q |
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| T |
28094708 |
agaaaacttaggcgagtacttggttcaccaagatgataatgt |
28094667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28095231 - 28095171
Alignment:
| Q |
1 |
tcttcttctccttgtccccannnnnnncattgatgttaaagaaaatgggttctcaggtgtc |
61 |
Q |
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| T |
28095231 |
tcttcttctccttgtccccatttttttcattgatgttaaagaaaatgggttctcaggtgtc |
28095171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 26155653 - 26155772
Alignment:
| Q |
128 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttgg |
227 |
Q |
| |
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||||||| |||||||||||| ||| || || |||||||| ||||||||||||||| ||||||||| || ||| || | ||||| ||||| ||| |
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| T |
26155653 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatgg |
26155752 |
T |
|
| Q |
228 |
cctggaacacatgattctgc |
247 |
Q |
| |
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| T |
26155753 |
ccaggaacacatgattctgc |
26155772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 26168951 - 26169070
Alignment:
| Q |
128 |
aggagaaaactaccctggttgtgattaccacccatcagacagaaaaaactggatggcaaatctcaaccctgacaaacttaagatcaaaatgattgtttgg |
227 |
Q |
| |
|
||||||| |||||||||||| ||| || || |||||||| ||||||||||||||| ||||||||| || ||| || | ||||| ||||| ||| |
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| T |
26168951 |
aggagaagactaccctggttctgaatatcatccatcagatagaaaaaactggatgaatggtctcaacccagagaaagttcatatcaatcaaattgtatgg |
26169050 |
T |
|
| Q |
228 |
cctggaacacatgattctgc |
247 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
26169051 |
ccaggaacacatgattctgc |
26169070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 565
Target Start/End: Original strand, 26155984 - 26156090
Alignment:
| Q |
459 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
558 |
Q |
| |
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||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
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| T |
26155984 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26156083 |
T |
|
| Q |
559 |
atgatgt |
565 |
Q |
| |
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|| |||| |
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| T |
26156084 |
atcatgt |
26156090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 565
Target Start/End: Original strand, 26169282 - 26169388
Alignment:
| Q |
459 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
558 |
Q |
| |
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||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | ||||| |||| ||| |||| ||||||| |
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| T |
26169282 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatg |
26169381 |
T |
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| Q |
559 |
atgatgt |
565 |
Q |
| |
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|| |||| |
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| T |
26169382 |
atcatgt |
26169388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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