View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_42 (Length: 240)
Name: NF18928_low_42
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_42 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0072 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 51167783 - 51167560
Alignment:
| Q |
17 |
agtttatggtctggtcattggagactttaggcataacttcaaatgccgatttatcaaacttttcacttggttcttcaagatccaattgatcaagttttgt |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51167783 |
agtttatggtctggtcatcggagactttaggcataacttcaaatgccgatttatcaaacttttcatttggttcttcaagatccaattgatcaagttttgt |
51167684 |
T |
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| Q |
117 |
gattgccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaat |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51167683 |
gattgccttttgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaat |
51167584 |
T |
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| Q |
217 |
aatgaagtacttgaagctctgttt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
51167583 |
aatgaagtacttgaagctctgttt |
51167560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 65785 - 65562
Alignment:
| Q |
17 |
agtttatggtctggtcattggagactttaggcataacttcaaatgccgatttatcaaacttttcacttggttcttcaagatccaattgatcaagttttgt |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| | |
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| T |
65785 |
agtttatagtctggtcattggagactttaggcataacttcaaatttcgatttatcaaactcttcatttggttcttcaagatccaattgatcaagttttat |
65686 |
T |
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| Q |
117 |
gattgccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaat |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65685 |
gattgccttctgcaaagcttgaattgcaatatcatcatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaat |
65586 |
T |
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| Q |
217 |
aatgaagtacttgaagctctgttt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
65585 |
aatgaagtacttgaagctctgttt |
65562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 640 - 426
Alignment:
| Q |
19 |
tttatggtctggtcattggagactttaggcataacttcaaatgccgatttatcaaacttttcacttggttcttcaagatccaattgatcaagttttgtga |
118 |
Q |
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|||||||| ||||| | |||||||||||||||||||||||| || ||| |||||| |||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
640 |
tttatggtttggtcgtcggagactttaggcataacttcaaacattgaattaacaaactcttcatttggctcttcaatatccaattgatcaagttttgtga |
541 |
T |
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| Q |
119 |
ttgccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaataa |
218 |
Q |
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|| |||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
540 |
tt-ccttccgcaaagcttgaattgcaatatcatgatgttttatcgatcgtgaacctctttcagatagctcaagagactcaaccataatactattaaacaa |
442 |
T |
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| Q |
219 |
tgaagtacttgaagct |
234 |
Q |
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|||||||||||||||| |
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| T |
441 |
tgaagtacttgaagct |
426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 19330677 - 19330458
Alignment:
| Q |
21 |
tatggtctggtcattggagactttaggcataacttcaaatgccgatttatcaaacttttcacttggttcttcaagatccaattgatcaagttttgtgatt |
120 |
Q |
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|||| ||| ||| ||||| |||||||||||||| | ||||| ||| ||||||||| |||| |||||||||||| |||||| |||| |||| ||||||| |
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| T |
19330677 |
tatgatctagtcgttggatactttaggcataaccttaaatgtcgaattatcaaacccttcatttggttcttcaatatccaaacgatctagttctgtgatt |
19330578 |
T |
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| Q |
121 |
gccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactcaaccataatactattaaataatg |
220 |
Q |
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| ||||| |||| ||||||||||||| |||||| ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
19330577 |
tctttccgtaaagtttgaattgcaatatcatgatacttttttgatcgcgaacctctttcagataattcaagaaactcaaccataatactattaaacaatg |
19330478 |
T |
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| Q |
221 |
aagtacttgaagctctgttt |
240 |
Q |
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|||||||||||||||||||| |
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| T |
19330477 |
aagtacttgaagctctgttt |
19330458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 48776204 - 48776063
Alignment:
| Q |
99 |
caattgatcaagttttgtgattgccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagttcaagagactca |
198 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
48776204 |
caattgatcaagttttgcgatcgccttccgcaaagcttgaattgcaatatcatgatgttttttcgatcgtgaacctctttcagatagctcaagagactca |
48776105 |
T |
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| Q |
199 |
accataatactattaaataatgaagtacttgaagctctgttt |
240 |
Q |
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| T |
48776104 |
accataatactattaaacaatgaagtacttgaggctcggttt |
48776063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 48776238 - 48776205
Alignment:
| Q |
182 |
atagttcaagagactcaaccataatactattaaa |
215 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
48776238 |
atagctcaagagactcaaccataatactattaaa |
48776205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 44884330 - 44884477
Alignment:
| Q |
87 |
ttcttcaagatccaattgatcaagttttgtgattgccttccgcaaagcttgaattgcaataccatgatgcttttctgagcgtgaacctctttcagatagt |
186 |
Q |
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| T |
44884330 |
ttcttcaagctctattagatcaagttttgcaattgcattttgcaaacattgaattgcaatatcatgatgtttttttgatcgtgaagctctttcagaaaat |
44884429 |
T |
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| Q |
187 |
tcaagagactcaaccataatactattaaataatgaagtacttgaagct |
234 |
Q |
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||||||| |||||||| ||||||||| |||||||| || |||||| |
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| T |
44884430 |
tcaagaggacgaaccataacactattaaacaatgaagtgctagaagct |
44884477 |
T |
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