View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18928_low_46 (Length: 231)
Name: NF18928_low_46
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 29181607 - 29181410
Alignment:
| Q |
18 |
tcactcaccgccactcttcattccctaaactctcctccccctctctaccttatccctcattttcttcttcaccccccttattactaccctccatcaaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29181607 |
tcactcaccgccactcttcattccctaaactctcctccccctctctaccttatcactcattttcttcttcaccccccttattactaccctccatcaaagc |
29181508 |
T |
|
| Q |
118 |
atcatcctctccaaataacaacaacaacccttttcaaaaaccccaaaacactttctcccaaattctcaaaacccttaacccctttacctcacctctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29181507 |
atcatcctctccaaataacaacaacaacccttttcaaaaaccccaaaacactttctcccaaattctcaaaacccttaacccctttacctcacctctct |
29181410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27998950 - 27998903
Alignment:
| Q |
169 |
tttctcccaaattctcaaaacccttaa-cccctttacctcacctctct |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27998950 |
tttctcccaaattctcaaaacccttaaccccctttacctcacctctct |
27998903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University