View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_51 (Length: 215)
Name: NF18928_low_51
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 30494395 - 30494578
Alignment:
| Q |
16 |
gaagattgtgatcatgatgatgaagaagttataggacctctttacaaaggccttgtcaatctgaactacccgcgtgatatcatttcagattctctaagac |
115 |
Q |
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| T |
30494395 |
gaagattgtgatcatgatgatgaagaagttataggacctctttacgaaggccttgtcaatctgaactacccgcgtgatatcatttcagattctctaagac |
30494494 |
T |
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| Q |
116 |
gatttggattccctgtctcggtcactcctctaacgaataaagcttctaccatctcatctccttctctagttatccaatgtgatg |
199 |
Q |
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| T |
30494495 |
gatttggattccctgtctcggtcactcctccaacgaataaagcttctaccatctcatctccttctctagttatccaatgtgatg |
30494578 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 10451002 - 10450914
Alignment:
| Q |
46 |
ataggacctctttacaaaggccttgtcaatctgaactacccgcgtgatatcatttcagattctctaagacgatttggattccctgtctc |
134 |
Q |
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| T |
10451002 |
ataggacctctttacaaagggctcgtccatctcaactatccgagagacatcattgtcgacactctaagacgatttggattccccgtctc |
10450914 |
T |
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