View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_52 (Length: 211)
Name: NF18928_low_52
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 39172955 - 39172783
Alignment:
| Q |
18 |
taaaaaggacctttaaagaatatataaaaagttgaattgaacaagagtagataaagaagaaaatgaaattaattaattgtagaatgagctgagcttcagt |
117 |
Q |
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| T |
39172955 |
taaaaaggacctttaaagactgtataaaaagttgaattgaacaggagtagataaagaagaaaatgaaattaattaattgtagaatgagct-----tcagt |
39172861 |
T |
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| Q |
118 |
tgttgttgttttggtataccaagaacagaattaagctattggacaattgcatatttgaaatagtacattatcaaatat |
195 |
Q |
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| T |
39172860 |
ttttgttgttttggtataccaagaacagaattaagctattggacaactgcatatttgaaatagtacattatcaaatat |
39172783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 39176820 - 39176659
Alignment:
| Q |
25 |
gacctttaaagaatatataaaaagttgaattgaacaagagtagataaagaagaaaatgaaattaattaattgtagaatgagctgagcttcagttgttgtt |
124 |
Q |
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| T |
39176820 |
gacctttaaagactgaataaaaagttgaaatgaacaagagtagataa-gaagaaaatgaaattaatt----gtagaataagctg-----cagtttttgtt |
39176731 |
T |
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| Q |
125 |
gttttggtataccaagaacagaattaagcta-ttggacaattgcatatttgaaatagtacattatcaaatat |
195 |
Q |
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| T |
39176730 |
gttatggtataccaagaacagaattatgctatttggacaattccatatttgaaatagtacattgtcaaatat |
39176659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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