View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18928_low_7 (Length: 509)
Name: NF18928_low_7
Description: NF18928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18928_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 469
Target Start/End: Original strand, 44189305 - 44189765
Alignment:
| Q |
9 |
tattattctccaaaattaatttcagagagagatttagacatgacgaatattgtattcagtattctccctaaacttcctattgagcctctcaaccaattta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44189305 |
tattattctccaaaattaatttcagagagagatttagacatgacgaatattgtattcagtattctccctaaacttcctattgagcctctcaaccaattta |
44189404 |
T |
|
| Q |
109 |
ctaatggtttgaacttaactacattatgcttgtgatatgtatgaactatgtttgctttgtgtattactattacttatttatttgtacgatctaagtcaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44189405 |
ctaatggtttgaacttaactacattatgcttgtgatatgtatgaactatatttgctttgtgtattactattacttatttatttgtacgatctaagtcaat |
44189504 |
T |
|
| Q |
209 |
taactgggtctgttcaagcaatttgattgctttgtcaatcaagcttgtgaaattttagagttataatgaaattgtatatttagcgggtagcatgcactca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44189505 |
taactgggtctgttcaagcaatttgattgctttgtcaatcaagcttgtgaaattttagagttataatgaaattgtatatttagcgggtagcatgcactca |
44189604 |
T |
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| Q |
309 |
tatgaggataaccggtcaccaatttatctaagcacataacactgccaaaaattagaggcaatggtccaggccatttgcaaaggattctcaaattactcat |
408 |
Q |
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| T |
44189605 |
tatgaggataaccggtcaccaatttatctaagcacatagcactgccaaaaattagaggcaatggtccaggccatttgcaaaggattctcaaattactcat |
44189704 |
T |
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| Q |
409 |
aatccattcatagtaaaacttgtccaagaaaaaggcatgttgaaattaaccgtcatttccc |
469 |
Q |
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| T |
44189705 |
aatccattcatagtaaaacttgtccaagaaaaaggcatgttgaaattaaccgtcatttccc |
44189765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 293 - 434
Target Start/End: Original strand, 5392941 - 5393082
Alignment:
| Q |
293 |
gggtagcatgcactcatatgaggataacc-ggtcaccaatttatctaagcacataacactgccaaaaattagaggcaatggtccaggccatttgcaaagg |
391 |
Q |
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||||||||| || ||||||||||| | | ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
5392941 |
gggtagcatacatacatatgaggattatctggtcaccaatttatcgaagcacaaaacactgccaaaatttagaggca-tggtccaggacatttgcaaagg |
5393039 |
T |
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| Q |
392 |
attctcaaattactcataatccattcatagtaaaacttgtcca |
434 |
Q |
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| T |
5393040 |
attctcaaattactcataatccattcatagtaaaacttctcca |
5393082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 31130415 - 31130543
Alignment:
| Q |
117 |
ttgaacttaactacattatgcttgtgatatgtatgaactatgtttgctttgtgtattactattacttatttatttgtacgatctaagtcaattaactggg |
216 |
Q |
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|||||||||| |||||| |||||| ||||| ||| ||||||||| ||||||||||| || |||||||||||||||||| || | |||||||| ||| |
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| T |
31130415 |
ttgaacttaaatacatttggcttgtcatatgcatgcactatgtttcctttgtgtattgcttttacttatttatttgtacattcaagatcaattaatcggg |
31130514 |
T |
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| Q |
217 |
tctgttcaagcaatttgattgctttgtca |
245 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
31130515 |
tctgttcaagcaatttgattactttgtca |
31130543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 13472536 - 13472499
Alignment:
| Q |
139 |
tgtgatatgtatgaactatgtttgctttgtgtattact |
176 |
Q |
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||||||||| ||| |||||||||||||||||||||||| |
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| T |
13472536 |
tgtgatatgcatgcactatgtttgctttgtgtattact |
13472499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 27229765 - 27229705
Alignment:
| Q |
116 |
tttgaacttaactacattatgcttgtgatatgtatgaactatgtttgctttgtgtattact |
176 |
Q |
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||||||||||| || | | ||||||||||||||||| ||| ||||||||| ||||||||| |
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| T |
27229765 |
tttgaacttaaataaactttgcttgtgatatgtatgcactgcgtttgctttctgtattact |
27229705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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