View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18929_high_2 (Length: 468)
Name: NF18929_high_2
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 331075 - 330639
Alignment:
| Q |
1 |
atgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtct-------gctttatt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
331075 |
atgagtcaatacaatcagcaacaaccaccggtcggggttccaccgcctcaaggtacatacgtaatcattattgattgctttgtctaatgtccgcattatt |
330976 |
T |
|
| Q |
94 |
cattttacatttctcaatcaatctcatgatttatttattatgaataggttatccaccatctgatgcaaaggaaggacatcctccacaaggatatccacct |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
330975 |
cattttacatttctcaatc----tcatgatttatttat---gaataggttatccaccatctgatgcaaaggaaggacatcctccacaagggtatccacca |
330883 |
T |
|
| Q |
194 |
caagggtatccaccgcaaggttatccaccgcaagggtatccaccacaaggatatccgccaccgggatatccaccaccaggttatccaccgcaacaaggat |
293 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330882 |
caagggtatccaccgcaagggtatccaccgcaagg---------------atatccgccaccgggatatccaccaccaggttatccaccgcaacaaggat |
330798 |
T |
|
| Q |
294 |
atcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatacgctcaacctccacctcctcaacatgtacacaatcacaacaa |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330797 |
atcctccaccaccctacccagcacaagggtatcctccacaatatgctcctcctcaatacgctcaacctccacctcctcaacatgtacacaatcacaacaa |
330698 |
T |
|
| Q |
394 |
ttcaagcggccctggttgtttagaaggatggtacgtacgttaattacataattccctct |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
330697 |
ttcaagcggccctggttgtttagaaggatggtacgttcgttaattatataattccctct |
330639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University