View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18929_high_3 (Length: 377)
Name: NF18929_high_3
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 41611711 - 41612078
Alignment:
| Q |
1 |
tcaaggacaaaatctaggtttagatattgtaaaaaacaattttacggttaactaaacccactatttttatacatctggtaagaaaataatttgagtcaaa |
100 |
Q |
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| T |
41611711 |
tcaaggacaaaatctagatttagatattgtaaaaaacaattttacggttaactaaacccactatttttatacatctggtaagaaaataatttgagtcaaa |
41611810 |
T |
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| Q |
101 |
acatggtttttggtaagggaatggaacaggtatctgagattttgaatagagacataaaaaagttaaagattttccttaaaacggtgagaagactggtagg |
200 |
Q |
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| T |
41611811 |
acatggtttttggtaagggaatggaacaggtatctgagattttgaatagagacataaaaaagttaaagattttccttaaaacggtgagaagactggtagg |
41611910 |
T |
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| Q |
201 |
attagaaacatgaccggcagttcacttcttttaactttgttttcgtacacacgtcatggtcaatagtagttaccatttccaataccatgcatatatacat |
300 |
Q |
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| T |
41611911 |
attagaaacatgaccggcagttcacttcttttaactttgttttcgtacacacgtcatggtcaatagtagttaccatttccaataccatgc--atatacat |
41612008 |
T |
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| Q |
301 |
ataattaatattaagaattttatttatttagtcttcatcttttgttgaagccaatttgaaaatgatgatg |
370 |
Q |
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| T |
41612009 |
ataattaatattaagaattttatttatttagtcttcatcttttgttgaagccaatttgaaaatgatgatg |
41612078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 41611674 - 41611710
Alignment:
| Q |
7 |
acaaaatctaggtttagatattgtaaaaaacaatttt |
43 |
Q |
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| T |
41611674 |
acaaaatatagatttagatattgtaaaaaacaatttt |
41611710 |
T |
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