View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18929_high_7 (Length: 314)

Name: NF18929_high_7
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18929_high_7
NF18929_high_7
[»] chr6 (7 HSPs)
chr6 (12-284)||(33217368-33217639)
chr6 (58-176)||(4006612-4006730)
chr6 (111-176)||(1402947-1403012)
chr6 (131-182)||(2117374-2117425)
chr6 (135-172)||(1904790-1904827)
chr6 (135-172)||(1909023-1909060)
chr6 (91-176)||(29274283-29274368)
[»] chr3 (7 HSPs)
chr3 (83-176)||(1395594-1395687)
chr3 (147-214)||(14548739-14548804)
chr3 (102-176)||(24235737-24235811)
chr3 (117-175)||(32555036-32555094)
chr3 (137-182)||(35246639-35246684)
chr3 (58-118)||(4534468-4534528)
chr3 (100-176)||(33307506-33307582)
[»] chr5 (5 HSPs)
chr5 (100-176)||(18704090-18704165)
chr5 (135-176)||(34205214-34205255)
chr5 (147-214)||(37588378-37588443)
chr5 (110-176)||(39823175-39823241)
chr5 (100-164)||(35135728-35135792)
[»] chr2 (7 HSPs)
chr2 (93-176)||(10143105-10143188)
chr2 (102-162)||(6547852-6547912)
chr2 (117-176)||(11513855-11513914)
chr2 (102-176)||(43199356-43199430)
chr2 (93-174)||(11344340-11344421)
chr2 (135-176)||(36863679-36863720)
chr2 (135-175)||(33944580-33944620)
[»] chr4 (7 HSPs)
chr4 (103-176)||(49219082-49219155)
chr4 (130-182)||(24091433-24091485)
chr4 (135-176)||(8130149-8130190)
chr4 (100-165)||(44119227-44119292)
chr4 (99-176)||(55870395-55870472)
chr4 (137-214)||(18628561-18628636)
chr4 (100-176)||(45128364-45128440)
[»] chr8 (2 HSPs)
chr8 (104-176)||(38561670-38561742)
chr8 (59-162)||(11493871-11493974)
[»] chr7 (9 HSPs)
chr7 (100-176)||(1417204-1417280)
chr7 (100-176)||(49060480-49060556)
chr7 (56-103)||(1422795-1422842)
chr7 (93-164)||(31002694-31002765)
chr7 (99-176)||(5006563-5006640)
chr7 (93-174)||(5373158-5373239)
chr7 (135-176)||(24909639-24909680)
chr7 (58-98)||(5499310-5499350)
chr7 (132-176)||(36537892-36537936)
[»] chr1 (9 HSPs)
chr1 (56-96)||(24153446-24153486)
chr1 (100-176)||(48830130-48830206)
chr1 (93-176)||(17269183-17269266)
chr1 (117-176)||(27738234-27738293)
chr1 (101-176)||(42556685-42556760)
chr1 (58-108)||(29665884-29665934)
chr1 (58-98)||(28075669-28075709)
chr1 (120-176)||(28467361-28467417)
chr1 (135-175)||(29007771-29007811)
[»] scaffold0024 (1 HSPs)
scaffold0024 (93-176)||(27509-27592)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 33217639 - 33217368
Alignment:
Q  12 atgaagacaaaattaaattataggatttgattatgaattcaatttatttggataaacagtttaattaaccacttatagcagaagtgcatatgtataattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217639 atgaagacaaaattaaattataggatttgattatgaattcaatttatttggataaacagtttaattaaccacttatagcagaagtgcatatgtataattt 33217540  T
Q  112 atttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcataggttattatggttgagagcttatggaataagctga 211  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33217539 atttatacaacaaaagcttaa-caaagttaaaatatttttatataagctataaattgttttcgtaggttattatggttgagagcttatggaataagctga 33217441  T
Q  212 aaagcaaattctagtacacaaacaagaggatcaataacactataggctaacataagatcaaaattaacaagat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217440 aaagcaaattctagtacacaaacaagaggatcaataacactataggctaacataagatcaaaattaacaagat 33217368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 4006612 - 4006730
Alignment:
Q  58 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataa 157  Q
    ||||||||| ||  |||||||| | ||||||||| |||||| |||| ||||  ||||| || |||||| | | ||| ||||||||| | |||||||||||    
T  4006612 tttggataagcaacttaattaatcccttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataa 4006711  T
Q  158 gctataaattgttttcata 176  Q
    ||||||| |||||||||||    
T  4006712 gctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 1402947 - 1403012
Alignment:
Q  111 tatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||| || |||||||| | ||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcata 1403012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 2117374 - 2117425
Alignment:
Q  131 aaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 182  Q
    ||||||||||||| |||||| |||||| |||||| ||||||||||| |||||    
T  2117374 aaacaaagtcaaactattttcatataatctataagttgttttcataagttat 2117425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 1904790 - 1904827
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgtttt 172  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1904790 aaagtcaaattatttttatataagctatagattgtttt 1904827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 1909023 - 1909060
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgtttt 172  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1909023 aaagtcaaattatttttatataagctatagattgtttt 1909060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 29274368 - 29274283
Alignment:
Q  91 agaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||| ||| |||||||||  ||||| || | |||||| | ||| ||||||||| | |||| |||||||||||||| ||||||||||    
T  29274368 agaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 1395594 - 1395687
Alignment:
Q  83 cttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| ||||||||||||||||  ||||| || |||||||| | ||| ||||||||| |||||| ||||||||||| || ||||||||||    
T  1395594 cttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcata 1395687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  147 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 214  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 24235811 - 24235737
Alignment:
Q  102 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||| |||||| || |||||||| | | | ||||||||| |||||  ||||||||||||| |||||||||||    
T  24235811 tgtataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcata 24235737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 32555094 - 32555036
Alignment:
Q  117 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcat 175  Q
    ||||||||||| | ||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  32555094 tacaacaaaagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 35246684 - 35246639
Alignment:
Q  137 agtcaaaatatttttatataagctataaattgttttcataggttat 182  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||    
T  35246684 agtcaaactatttttatataagctataagttgtttttataagttat 35246639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 4534528 - 4534468
Alignment:
Q  58 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttata 118  Q
    ||||||||||||  |||||||| ||||||||| | |||||| || |||||| |||||||||    
T  4534528 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttata 4534468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 33307582 - 33307506
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||| || | |||||| | |||||| | |||| |||||||||||||| |||||  ||||||||||    
T  33307582 tatgtataaattatttctagagcaaaagataaaacaatgccaaactatttttatataagttataagatgttttcata 33307506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 18704165 - 18704090
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||| || |||||||| | ||| ||||||||  |||||||||||||||||||| |||||||||||    
T  18704165 tatgtataagttatttctataacaaaagat-aaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 34205214 - 34205255
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  34205214 aaagtcaaattatttttatataagctataagttgttttcata 34205255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 37588443 - 37588378
Alignment:
Q  147 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 214  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 37588378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 39823241 - 39823175
Alignment:
Q  110 ttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||||| | ||| ||||||||| || ||| |||||||||| || |||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcata 39823175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 35135792 - 35135728
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 164  Q
    |||||||||  ||||| || |||||||| | ||| ||||||||| |||||| |||||||||||||    
T  35135792 tatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 10143105 - 10143188
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||| ||||||||| |||||| || |||||||| | |||  |||||||| | |||||||||||||||||| || ||||||||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcata 10143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 6547852 - 6547912
Alignment:
Q  102 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctat 162  Q
    ||||||| |||||| || | ||||||   ||||||||||||||||||||||||||||||||    
T  6547852 tgtataagttatttctatagcaaaagtcaaaacaaagtcaaaatatttttatataagctat 6547912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 11513855 - 11513914
Alignment:
Q  117 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  11513855 tacaacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcata 11513914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 43199356 - 43199430
Alignment:
Q  102 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||| |||||| ||||||||||| | ||| ||||| ||| ||| ||  |||||||||||| |||||||||||    
T  43199356 tgtataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcata 43199430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 11344421 - 11344340
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 174  Q
    |||||| |||| ||||  ||||| || |||||||| | ||| ||||||||| | |||| ||| |||||||||||||||||||    
T  11344421 aagtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 36863720 - 36863679
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  36863720 aaagtcaaacaatttttatataagttataaattgttttcata 36863679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 33944580 - 33944620
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcat 175  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  33944580 aaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 49219082 - 49219155
Alignment:
Q  103 gtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||| |||||| || |||||||  | ||| ||||||||| |||||| ||||||||||||| |||||||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 24091433 - 24091485
Alignment:
Q  130 taaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 182  Q
    |||| ||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataagttat 24091485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 8130149 - 8130190
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||| |||||||||||||| ||||||||||    
T  8130149 aaagtcaaattattttcatataagctataaactgttttcata 8130190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 44119292 - 44119227
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaa 165  Q
    ||||||||| |||||| || | |||||| | |||||||||||| || |||| ||||||||||||||    
T  44119292 tatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctataaa 44119227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 55870472 - 55870395
Alignment:
Q  99 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||||  |||| || |||||||| | ||| ||||||||| | |||| | ||||||||||| |||||||||||    
T  55870472 atatgtataatccatttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcata 55870395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 18628636 - 18628561
Alignment:
Q  137 agtcaaaatatttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 214  Q
    ||||||| | |||||||||||| |||||| |||||||||| |||||  ||   |||||||||||| |||||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataagttatcttg---gagagcttatggaaataagctgaaaa 18628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 45128440 - 45128364
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||  ||||| || |||||||| | |||  || ||||| |||| | |||||||||||||||||||||||||    
T  45128440 tatgtataaactatttctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcata 45128364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 38561670 - 38561742
Alignment:
Q  104 tataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||| ||||||||| |||||||| | ||| ||||||||| ||||||||| ||  |||||| |||||||||||    
T  38561670 tataagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcata 38561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 11493871 - 11493974
Alignment:
Q  59 ttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataag 158  Q
    |||||||||||| |||||||| ||||||||| | |||||| | |  |||| ||||||  |||||||||| | ||  ||||||||| | ||||||||| ||    
T  11493871 ttggataaacagcttaattaagcacttatagtataagtgcttgttcataagttattttcacaacaaaagataaagtaaagtcaaagtttttttatatgag 11493970  T
Q  159 ctat 162  Q
    ||||    
T  11493971 ctat 11493974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 1417204 - 1417280
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||  |||||||| |||||||| | ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  1417204 tatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcata 1417280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 49060480 - 49060556
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||  ||||| || |||||||  | ||| ||||||||| |||||||||||||||||||| || ||||||||    
T  49060480 tatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 1422795 - 1422842
Alignment:
Q  56 tatttggataaacagtttaattaaccacttatagcagaagtgcatatg 103  Q
    ||||||||||||||| |||||||| || |||||||| |||||||||||    
T  1422795 tatttggataaacagcttaattaaacatttatagcataagtgcatatg 1422842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 31002694 - 31002765
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 164  Q
    |||||| |||||||||  |||||  || ||||||| | ||| |||||||||||||||| |||||||||||||    
T  31002694 aagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctataa 31002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 5006640 - 5006563
Alignment:
Q  99 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||||  ||||  || |||||||| | ||| ||||||||| | |||| ||||||| |||||||||||||||||    
T  5006640 atatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 5373158 - 5373239
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 174  Q
    |||||| ||||||||   ||||| || |||||||| | ||| |||||| ||| ||||||||||||| ||||| |||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 24909639 - 24909680
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  24909639 aaagtcaaattattttcatataagctataagttgttttcata 24909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 5499350 - 5499310
Alignment:
Q  58 tttggataaacagtttaattaaccacttatagcagaagtgc 98  Q
    |||||||||||| ||||||||||||||||| ||| ||||||    
T  5499350 tttggataaacaatttaattaaccacttatggcaaaagtgc 5499310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 36537892 - 36537936
Alignment:
Q  132 aacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||||||| |||||| ||||||||||| || ||||||||||    
T  36537892 aacaaagtcaaattattttcatataagctatgaagtgttttcata 36537936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 24153446 - 24153486
Alignment:
Q  56 tatttggataaacagtttaattaaccacttatagcagaagt 96  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  24153446 tatttggataaacagcttaattgaccacttatagcagaagt 24153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 48830206 - 48830130
Alignment:
Q  100 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||| |||||| ||  || |||| | ||| ||||||||| |||||| |||||||||||||| ||||||||||    
T  48830206 tatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 17269183 - 17269266
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||| ||||||||| |||||| || ||||||||   ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  17269183 aagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcata 17269266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 27738293 - 27738234
Alignment:
Q  117 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  27738293 tacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcata 27738234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 42556760 - 42556685
Alignment:
Q  101 atgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||| |||||| ||  ||||||| | ||| ||| ||||| || ||||||||||||||||| |||||||||||    
T  42556760 atgtataagttatttctatgacaaaagatgaaataaaatcaaactacttttatataagctataagttgttttcata 42556685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 29665934 - 29665884
Alignment:
Q  58 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataa 108  Q
    ||||||||||||| |||||||| ||||||||||| ||| || |||||||||    
T  29665934 tttggataaacagcttaattaaacacttatagcataagcgcttatgtataa 29665884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 28075669 - 28075709
Alignment:
Q  58 tttggataaacagtttaattaaccacttatagcagaagtgc 98  Q
    |||||||||||| ||||||||| ||||||||||| ||||||    
T  28075669 tttggataaacaatttaattaagcacttatagcacaagtgc 28075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 28467417 - 28467361
Alignment:
Q  120 aacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||||| | ||| ||||||||| |||||| |||||||||| || |||||||||||    
T  28467417 aacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcata 28467361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 29007811 - 29007771
Alignment:
Q  135 aaagtcaaaatatttttatataagctataaattgttttcat 175  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  29007811 aaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 27509 - 27592
Alignment:
Q  93 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 176  Q
    |||||| ||||||||| |||||| || |||| ||| | ||| ||||||||| | |||| |||||| |||||| |||||||||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcata 27592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University