View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18929_high_8 (Length: 313)
Name: NF18929_high_8
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 41612495 - 41612204
Alignment:
| Q |
11 |
catcatcatcaaagttcaaaaatcctccata------tctcaaaataacaacaatagaaactnnnnnnnngaagagagaaaatacctttcaaaatacaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41612495 |
catcatcatcaaagttcaaaaatcctccataaccccatctcaaaataacaacaatagaaactaacaaaaagaagagagaaaatacctttcaaaatacaag |
41612396 |
T |
|
| Q |
105 |
acaaagggtaggagaagaagaaatgtagcaaaagaagtgtaaatgacaatggtaaaagattggagacctaaagacataagatacttcaagagcatagcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41612395 |
acaaagggtaggagaagaagaaatgtagcaaaagaagtgtaaatgacaatggtaaaagattggagacctaaagacataagatacttcaagagcatagcat |
41612296 |
T |
|
| Q |
205 |
ttccagcataaacaaattgtacaccgatcaaccctccaattacaaccacatcttccatcattcttgaattcatcatccccaccattttcacc |
296 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41612295 |
ttccagcataaacaaattgtacaccaatcaacccgccaattacaaccacatcttccatcattcttgaattcatcatccccaccattttcacc |
41612204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University