View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18929_low_1 (Length: 977)
Name: NF18929_low_1
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 665; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 117 - 961
Target Start/End: Complemental strand, 37494118 - 37493287
Alignment:
| Q |
117 |
tacttctgcaaacacggctcgagaccgaatgacaaaagaagaccagtgcgtgccaattggaatttaaactgcattaaacttcgacaatttgacacagcac |
216 |
Q |
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| T |
37494118 |
tacttctgcaaacacggctcgagaccgaatgacaaaagaagaccagtgc----caattggaattcaaactgcattaaacttcgacaatttgacacggcac |
37494023 |
T |
|
| Q |
217 |
aacgcagcagttatggatggagaccagaaaagtggggtaacaatttcgacagaagtaaaatgactaagaatcacaatgtttctctggaaataggatnnnn |
316 |
Q |
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| T |
37494022 |
aacgcagcagttatggatggagaccagaaaagtgaggtaacaatttcgacagaagtagaatgactaagaatcacaatgtttctctggaaattgaataaaa |
37493923 |
T |
|
| Q |
317 |
nnn--cagtgtacatttgcacatggatgaaaattacataaccaaattgtcttttgtttgaaggaaaattaaaatgggtgatttgcatgtcagccttggtt |
414 |
Q |
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| T |
37493922 |
aaaaccagtgtacatttgcacatggatgaaaattacataaccaaattgtcttttgtttgaaggaaaattaaaatgggtgatttgcatgtcagccttggtt |
37493823 |
T |
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| Q |
415 |
gaaatggggttattaatttaacttatttgtgttaatgccttacacaagtgcagtttattttgaaaagggtcagcattccatggcctgcagtgagggcatg |
514 |
Q |
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| T |
37493822 |
gaaatggggttattaatttaacttatttgtgttaatgccttacacaagtgcagtttattttgaaaagggtcagcattccatggcctgcagtgagggcgcg |
37493723 |
T |
|
| Q |
515 |
aaaaatggccaactcatgaagtataaacacaatgctgcttccaaatgaagcacaacaacaataatagaatgtatccggtacggatgatgtttcaatcaac |
614 |
Q |
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| T |
37493722 |
aaaaatggccaactcatgaagtataaacacaatgctgcttccaaatgaagcacaacaacaataatagaatgtatccggtacggatgatgtttcaatcaac |
37493623 |
T |
|
| Q |
615 |
atactctactctagtttctttgtttccgcttgctaatttcaattttttattatagtgaatttcatgaagg-nnnnnnnctggttggagcttattataaaa |
713 |
Q |
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| T |
37493622 |
atactctactctagtttctttgtttccgcttgctaatttcaatttttcataatagtgaatttcatgaaggaaaaaaaactggttggagcttattataaaa |
37493523 |
T |
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| Q |
714 |
aacaatttcaaatacaatttcaaaagaactataaacgattagcatttataaatctccaagaaaagattaaacatgatgtaagtatgcataatattaatgc |
813 |
Q |
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| T |
37493522 |
a------------acaatttcaaaagaactataaacgattagcatttataaatctccaagaaaagattaaacatgatgtaagcatgcataatattaatgc |
37493435 |
T |
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| Q |
814 |
aacgttattaccatgatgatttatgtgctaggtaggcttcatggcacacgacttgaccacaggtggcccaagcctcttgttccgtacttgtgcctggaaa |
913 |
Q |
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| T |
37493434 |
aacattattaccatgatgatttatgtgttaggtaggcttcatggaacacgacttgaccacaggtggcccaagcctcttgttctgtacttgtgcctggaaa |
37493335 |
T |
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| Q |
914 |
attatagcagggctgttggaaggatcttcttgtttctgtgcttgaaag |
961 |
Q |
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| T |
37493334 |
attatagcagggatgttggaaggatcttcttgtttctgtgcttgaaag |
37493287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 539 - 684
Target Start/End: Complemental strand, 37495171 - 37495031
Alignment:
| Q |
539 |
aaacacaatgctgcttccaaatgaagcacaacaacaataatagaatgtatccggtacggatgatgtttcaatcaacatactctactctagtttctttgtt |
638 |
Q |
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| T |
37495171 |
aaacacaatgcagcttccaaatgatgcgcaacaacaataatagaatgtatc--gta---atgatgtttctatcaacatactctagtgaagtttctttgtt |
37495077 |
T |
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| Q |
639 |
tccgcttgctaatttcaattttttattatagtgaatttcatgaagg |
684 |
Q |
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| T |
37495076 |
tccgcttgataacttcaatttttcataacagtgaatttcatgaagg |
37495031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37494240 - 37494172
Alignment:
| Q |
1 |
ataaaatgccaaaataaattcaacaggctaataacttccaattgacagcctagaaattgtactgaacag |
69 |
Q |
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| T |
37494240 |
ataaaatgccaaaataaattcaacaggctaataacttccaatcgacagcctagaaattgtgctgaacag |
37494172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 751 - 785
Target Start/End: Complemental strand, 37494972 - 37494938
Alignment:
| Q |
751 |
attagcatttataaatctccaagaaaagattaaac |
785 |
Q |
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| T |
37494972 |
attagcatttataaatctccaagaaaagattaaac |
37494938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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