View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18929_low_5 (Length: 366)
Name: NF18929_low_5
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_low_5 |
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| [»] scaffold1630 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 26948809 - 26949156
Alignment:
| Q |
15 |
aacaattgcatcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaatactatccccgtaagttttcatttgactcactagt |
114 |
Q |
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| T |
26948809 |
aacaattgcatcatacttacgaggaatagaaattagaattttctcaacaattcttttgtcgagaatattatccctgtatgttttcatttgactcactagt |
26948908 |
T |
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| Q |
115 |
tcttttatcttggtataatattcttttacggtctcagact--ttcacttttaataactcaaactcacgtcttagagtatgaagtttaatggcacgtacct |
212 |
Q |
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| T |
26948909 |
tcttttatcttggtattatattcttttacggtctcaaactctttcatttttaataactcaaactcacgtcttagagtctgaagtttaatggcacatacct |
26949008 |
T |
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| Q |
213 |
tgtcacttccttcaaactcctcctttagtgtaccccaagcatctttggcacttatagctcccattattcttggaaagataccgtctgctactgcttgttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
26949009 |
tgtcacttccttcaaactcctcctttagtgtaccccaagcatctttggcacttatagctcccattattcttggaaagataatgtctgccaccgcttgttg |
26949108 |
T |
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| Q |
313 |
cagaaagaacaatgcctttgcatctttctgtttgttttccttcaactc |
360 |
Q |
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| T |
26949109 |
cagaaagaacaatgcatttgcatctttctgtttattttccttcaactc |
26949156 |
T |
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Target: scaffold1630 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 875 - 813
Alignment:
| Q |
19 |
attgcatcatatctacgaggaatataaattcgaatttcctcaacaattcttttgtcgagaata |
81 |
Q |
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| T |
875 |
attgcatcatacttataaggaatagaaattagaattttctcaacaattcttttgtcgagaata |
813 |
T |
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