View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18929_low_7 (Length: 320)
Name: NF18929_low_7
Description: NF18929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18929_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 36603932 - 36604224
Alignment:
| Q |
10 |
acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag |
109 |
Q |
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| T |
36603932 |
acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag |
36604031 |
T |
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| Q |
110 |
cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaagtataaacgcaatccacagcataacaagcggcctta |
209 |
Q |
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| T |
36604032 |
cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaaatataaacgcaatccacagcataacaagcagcctta |
36604131 |
T |
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| Q |
210 |
aagaatcacctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgtttt |
302 |
Q |
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| T |
36604132 |
aagaatcacctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgtttt |
36604224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 20989771 - 20989699
Alignment:
| Q |
217 |
acctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgtt |
289 |
Q |
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| T |
20989771 |
acctcatcaccaggattcttatcaggatgaagtctcaacgccaatttatgatacgccttctttatttcttgtt |
20989699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 20991097 - 20991006
Alignment:
| Q |
25 |
caaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttagcctcctg |
116 |
Q |
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| T |
20991097 |
caaccagtttcatcataaagtgcccgtttttcttcatccccgagaatggagataacattttgcaattgctgaaacttggctttagcttcctg |
20991006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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