View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1892_high_1 (Length: 446)

Name: NF1892_high_1
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1892_high_1
NF1892_high_1
[»] chr1 (3 HSPs)
chr1 (3-271)||(41834501-41834762)
chr1 (386-430)||(41834303-41834347)
chr1 (280-321)||(41834414-41834455)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 41834762 - 41834501
Alignment:
Q  3 ctcaaaacacttgttaatacagtatttctttaaattttaaaggaaatcattcgtacatctgtggtatgaaagtccttcttttgataacacatggagatat 102  Q
    |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41834762 ctcaaaacacttgttaata-----tttctttaaattttaaaggaaatcattcgtacatctgtggtatgaaagtccatcttttgataacacatggagatat 41834668  T
Q  103 acatataaattgcatgacattatgtatgcccatannnnnnnnnggtaatacattatatccatattattcagagcaattgaaattcaaaatacatatcggt 202  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  41834667 acatataaattgcatgacattatgtatgcccatatttttttttggtaatacattatatccatattatt--gagtaattgaaattcaaaatacatatcggt 41834570  T
Q  203 gatcgaactctttgaacattattcagnnnnnnnacaaaaataggcttggagcattgtcgaatcatgcta 271  Q
    | ||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  41834569 ggtcgaactctttaaacattattcagtttttttacaaaaataggcttggagcattgtcgaatcatgcta 41834501  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 41834347 - 41834303
Alignment:
Q  386 ggggaacaataacaccgtgaaataaaaaatgactcataagttata 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41834347 ggggaacaataacaccgtgaaataaaaaatgactcataagttata 41834303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 41834455 - 41834414
Alignment:
Q  280 aagtgatgttgccgaaaccttttatttgagagcttagctctc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41834455 aagtgatgttgccgaaaccttttatttgagagcttagctctc 41834414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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