View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1892_high_10 (Length: 227)
Name: NF1892_high_10
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1892_high_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 48712892 - 48713089
Alignment:
| Q |
9 |
cataggtcaagaaagtttttgatttttgtgaattgacaaatacattcatgaaattgtaaaatgtaattcaaaatggtccctccgtcaaaatttgatgtta |
108 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48712892 |
cataggtcaaaaaagtttctgatttttgtgaattgacaaatacattcatgaaattgtaaaatgtaattcaaaatggtccctccgtcaaaatttgatgtta |
48712991 |
T |
|
| Q |
109 |
gaaattatgacgtggtgcgttaattgaacatgccacattgtatgttatcctgcgtcaatgtaaactcatcatggactaattagcctacgaaatttagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48712992 |
gaaattatgacgtggtgcgttaattgaacatgccgcattgtatgttatcctgcgtcaatgtaaactcatcatggactaattagcctacgaaatttagg |
48713089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 25893708 - 25893767
Alignment:
| Q |
30 |
atttttgtgaattgacaaatacattcatgaaattgtaaaatgtaattcaaaatggtccct |
89 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||||||| |||||||| |||||| |
|
|
| T |
25893708 |
atttttgcaaattgataaatacatccatgaaattgtaaaatgttgttcaaaatagtccct |
25893767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 22201896 - 22201924
Alignment:
| Q |
199 |
aatttagggggtgtattggatcatgattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22201896 |
aatttagggggtgtattggatcatgattc |
22201924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 30010002 - 30009974
Alignment:
| Q |
199 |
aatttagggggtgtattggatcatgattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30010002 |
aatttagggggtgtattggatcatgattc |
30009974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 7017026 - 7016993
Alignment:
| Q |
194 |
tacgaaatttagggggtgtattggatcatgattc |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
7017026 |
tacgcaatttagggggtgtattggatcatgattc |
7016993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 31401579 - 31401607
Alignment:
| Q |
199 |
aatttagggggtgtattggatcatgattc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31401579 |
aatttagggggtgtattggatcatgattc |
31401607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 41725968 - 41725924
Alignment:
| Q |
26 |
tttgatttttgtgaattgacaaatacattcatgaaattgtaaaat |
70 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||| |
|
|
| T |
41725968 |
tttgatttttgtgaattgacaagtatatttgtgaaattgtaaaat |
41725924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University