View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1892_high_2 (Length: 444)

Name: NF1892_high_2
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1892_high_2
NF1892_high_2
[»] chr4 (11 HSPs)
chr4 (18-239)||(18731314-18731535)
chr4 (22-239)||(18699210-18699427)
chr4 (18-239)||(18723895-18724116)
chr4 (18-239)||(18679377-18679598)
chr4 (18-236)||(18655290-18655508)
chr4 (276-442)||(18731111-18731277)
chr4 (276-442)||(18723692-18723858)
chr4 (276-442)||(18655084-18655250)
chr4 (276-442)||(18699007-18699173)
chr4 (276-442)||(18679167-18679340)
chr4 (283-442)||(18074170-18074332)
[»] chr1 (6 HSPs)
chr1 (17-239)||(268167-268389)
chr1 (18-219)||(28127509-28127710)
chr1 (18-219)||(28164193-28164393)
chr1 (276-422)||(267977-268130)
chr1 (317-384)||(28164033-28164100)
chr1 (317-365)||(28127352-28127400)
[»] chr8 (1 HSPs)
chr8 (18-236)||(29273596-29273814)
[»] chr6 (53 HSPs)
chr6 (18-233)||(26646622-26646837)
chr6 (18-233)||(26752590-26752805)
chr6 (31-239)||(26656145-26656353)
chr6 (31-239)||(26762116-26762324)
chr6 (34-233)||(25579878-25580080)
chr6 (34-213)||(26056085-26056264)
chr6 (34-213)||(26076055-26076234)
chr6 (283-442)||(27427223-27427385)
chr6 (31-234)||(27337893-27338096)
chr6 (31-234)||(27398633-27398836)
chr6 (40-233)||(26143030-26143226)
chr6 (315-442)||(27604315-27604444)
chr6 (279-442)||(26802850-26803017)
chr6 (288-429)||(28781516-28781659)
chr6 (34-239)||(25538699-25538907)
chr6 (288-429)||(28786655-28786796)
chr6 (288-429)||(28792776-28792917)
chr6 (17-219)||(26823982-26824184)
chr6 (114-235)||(28786517-28786638)
chr6 (114-235)||(28781378-28781499)
chr6 (114-219)||(28792638-28792743)
chr6 (40-213)||(25481907-25482080)
chr6 (279-442)||(27592632-27592799)
chr6 (279-442)||(27679354-27679521)
chr6 (18-92)||(26623119-26623193)
chr6 (18-92)||(26729097-26729171)
chr6 (338-427)||(27698212-27698301)
chr6 (17-219)||(26861755-26861957)
chr6 (124-213)||(27214669-27214758)
chr6 (124-213)||(27234470-27234559)
chr6 (315-442)||(27706015-27706145)
chr6 (18-213)||(27718228-27718423)
chr6 (339-442)||(27677231-27677331)
chr6 (288-384)||(26646892-26646990)
chr6 (288-384)||(26752860-26752958)
chr6 (116-219)||(26949902-26950005)
chr6 (121-206)||(26617868-26617953)
chr6 (121-206)||(26723796-26723881)
chr6 (34-110)||(26049004-26049080)
chr6 (34-110)||(26070173-26070249)
chr6 (183-233)||(26884473-26884523)
chr6 (121-173)||(26811755-26811807)
chr6 (124-228)||(26959415-26959519)
chr6 (31-79)||(28139697-28139745)
chr6 (307-361)||(26824240-26824294)
chr6 (18-96)||(27724811-27724889)
chr6 (121-219)||(28297556-28297654)
chr6 (121-219)||(28514419-28514517)
chr6 (19-93)||(29826171-29826245)
chr6 (327-384)||(25483513-25483570)
chr6 (85-194)||(25506852-25506961)
chr6 (315-384)||(31284714-31284782)
chr6 (124-228)||(26975301-26975405)
[»] scaffold0003 (1 HSPs)
scaffold0003 (283-442)||(59978-60140)
[»] scaffold0277 (4 HSPs)
scaffold0277 (18-235)||(4498-4715)
scaffold0277 (288-429)||(13299-13442)
scaffold0277 (288-429)||(4336-4481)
scaffold0277 (114-235)||(13459-13580)
[»] scaffold0419 (2 HSPs)
scaffold0419 (288-429)||(7902-8045)
scaffold0419 (114-235)||(7764-7885)
[»] scaffold0349 (3 HSPs)
scaffold0349 (136-213)||(3269-3346)
scaffold0349 (18-213)||(14205-14400)
scaffold0349 (391-442)||(14084-14135)
[»] chr2 (2 HSPs)
chr2 (139-219)||(3279967-3280047)
chr2 (119-228)||(17993518-17993627)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 18731535 - 18731314
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18731535 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacaaaaag 18731436  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  18731435 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcatgggt 18731336  T
Q  218 actcctctttacttaattcttg 239  Q
    ||||||||||||||||||||||    
T  18731335 actcctctttacttaattcttg 18731314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 18699427 - 18699210
Alignment:
Q  22 ggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtt 121  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18699427 ggtcgtctcgttttgcctgttttctatggcgtagatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacggaaagagtt 18699328  T
Q  122 tccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  18699327 tccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagttctgggtactc 18699228  T
Q  222 ctctttacttaattcttg 239  Q
    ||||||||||||||||||    
T  18699227 ctctttacttaattcttg 18699210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 18724116 - 18723895
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| || |    
T  18724116 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacaccaaagtgggagttatggtgaacatctcactaagcacaaaatg 18724017  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18724016 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcctgggt 18723917  T
Q  218 actcctctttacttaattcttg 239  Q
    ||||||||||||||||||||||    
T  18723916 actcctctttacttaattcttg 18723895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 18679598 - 18679377
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  18679598 aaagggtcgtcttgttttgcctgttttctatgtcgtggatcctactcacatatgacatcaaagtggtagttatggtgaacatctcactaatcactgaaag 18679499  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18679498 agtttccaaaataacaataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagtcctgggt 18679399  T
Q  218 actcctctttacttaattcttg 239  Q
    ||||||||||||||||||||||    
T  18679398 actcctctttacttaattcttg 18679377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18655508 - 18655290
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  18655508 aaagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaacatctcactaagcacagaaag 18655409  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  18655408 aatttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcctgggt 18655309  T
Q  218 actcctctttacttaattc 236  Q
    ||||||||| |||||||||    
T  18655308 actcctcttcacttaattc 18655290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 18731277 - 18731111
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 375  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18731277 cctcaataataccatcttaaagcctaaattggaaacacctttttttttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 18731178  T
Q  376 tgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  18731177 tgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatcttattggacatg 18731111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 18723858 - 18723692
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 375  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18723858 cctcagtaataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 18723759  T
Q  376 tgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  18723758 tgatatattatgagtaaatggatgtgactgtgatgttgttacatactgacttatcttattggacatg 18723692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 18655250 - 18655084
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 375  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655250 cctcaatgataccatcttaaagcctaaattcgaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 18655151  T
Q  376 tgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||| |||| || |||||||||    
T  18655150 tgatatattatgagtaaatggatgtgactgtgatgttgttacacactgatttatcttattggacatg 18655084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 18699173 - 18699007
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 375  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699173 cctcaatgataccatcttaaagcctaaattggaaacacctttttaattacgtttttaaacaagtattagttatttataagtcaaaatagttagaaatgta 18699074  T
Q  376 tgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||    
T  18699073 tgatatactatgaggacatggatgtgactgtgatgttgttacacactgatttatcttattggacatg 18699007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 276 - 442
Target Start/End: Complemental strand, 18679340 - 18679167
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaatag-------ttag 368  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||    
T  18679340 cctcaataataccaaccgaaagcctaaattggaaacacctttttatttacgtttttaaacaagtattagttatttataagtcaaaatagtttgaatttag 18679241  T
Q  369 aaatgtatgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  18679240 aaatgtatgatatattatgagtacatgggtgtgactgtgatgttgttacatactgacttatcttattggacatg 18679167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 283 - 442
Target Start/End: Original strand, 18074170 - 18074332
Alignment:
Q  283 aataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatat 381  Q
    ||||||||||||||||||||||  | ||||||||||| |||||  ||||||||||| | ||||||||||||| ||||||||||||| |||||||| ||||    
T  18074170 aataccatcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatat 18074269  T
Q  382 attatgaggacatggatgtga--ctgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||| ||||||||||||   ||||||||||||||||||| ||||||||| |||||||||    
T  18074270 attatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatg 18074332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 268389 - 268167
Alignment:
Q  17 aaaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaa 116  Q
    |||||||||||||  ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |    
T  268389 aaaagggtcgtctcattttgcccgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacgaaga 268290  T
Q  117 gagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctggg 216  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| ||||| ||||    
T  268289 gagtttccaaaatagcaagaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtcgtggg 268190  T
Q  217 tactcctctttacttaattcttg 239  Q
    |||| ||||||||||||||||||    
T  268189 tactgctctttacttaattcttg 268167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 28127710 - 28127509
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||||  | ||| |||| |  ||||||||||||||| | ||  |||||||  || ||    
T  28127710 aaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttatggtgaagagcttgctaagcatggagag 28127611  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    || ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  28127610 aggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtccagggt 28127511  T
Q  218 ac 219  Q
    ||    
T  28127510 ac 28127509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 28164393 - 28164193
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||||  | |||||||| |  |||||||||||  || |||| ||||||||  |  ||    
T  28164393 aaagggtcgcctagttttgcctgttttct-tggcgtggatcctactgatgtgcgacatcatacagggagttatggcaaagatcttactaagcatggtgag 28164295  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    || ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  28164294 aggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtccagggt 28164195  T
Q  218 ac 219  Q
    ||    
T  28164194 ac 28164193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 422
Target Start/End: Complemental strand, 268130 - 267977
Alignment:
Q  276 cctcaataataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgt 374  Q
    |||| |||||||||||||||| | ||||| |  || |||||||| |||||| ||| |||| ||||||||||| |||||| | | ||||||||||||| ||    
T  268130 cctcgataataccatcttaaaccataaatggctaaaaccttttttatttacgtttctaaataagtattagttgtttatatgacgaaatagttagaaacgt 268031  T
Q  375 atgatatattatgagga----catggatgtga--ctgtgatgttgttacatact 422  Q
    || ||||||| |||| |    |||||||||||   |||||||||||||||||||    
T  268030 ataatatattttgagtacatgcatggatgtgattgtgtgatgttgttacatact 267977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 28164100 - 28164033
Alignment:
Q  317 tttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 384  Q
    ||||||||  ||||||||||||||| || |||||||| |||||||||||||||  |||||||| ||||    
T  28164100 tttatttatgtttttaaacaagtataagatatttatatgtcaaaatagttagagttgtatgatgtatt 28164033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 28127400 - 28127352
Alignment:
Q  317 tttatttacatttttaaacaagtattagttatttataagtcaaaatagt 365  Q
    ||||||||  ||||||||||||||| || |||||||| |||||||||||    
T  28127400 tttatttatgtttttaaacaagtataaggtatttatatgtcaaaatagt 28127352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 29273814 - 29273596
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  | ||    
T  29273814 aaagggtcgtctcattttgcctgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagtacgaagag 29273715  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| ||||| |||||    
T  29273714 agtttccaaaatagcaagaaaaacatggatcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtcatgggt 29273615  T
Q  218 actcctctttacttaattc 236  Q
    ||| |||||||||||||||    
T  29273614 actgctctttacttaattc 29273596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 53)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 26646622 - 26646837
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||  | ||    
T  26646622 aaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagag 26646721  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    ||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  26646722 agtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcctgggt 26646821  T
Q  218 actcctctttacttaa 233  Q
    || || ||||||||||    
T  26646822 accccactttacttaa 26646837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 26752590 - 26752805
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaag 117  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||  | ||    
T  26752590 aaagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagag 26752689  T
Q  118 agtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggt 217  Q
    ||||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||    
T  26752690 agtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcctgggt 26752789  T
Q  218 actcctctttacttaa 233  Q
    || || ||||||||||    
T  26752790 accccactttacttaa 26752805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 26656145 - 26656353
Alignment:
Q  31 gttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaata 130  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| | ||| ||||| ||||| ||||| ||||||||   |||||  ||||||||||    
T  26656145 gttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaata 26656244  T
Q  131 acaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcctctttact 230  Q
    ||||| |||||||| || ||||| | ||||||||| | ||||||||||||||||| |||||||| |||||||||| |||||  |||||| || |||||||    
T  26656245 acaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtaccccactttact 26656344  T
Q  231 taattcttg 239  Q
    ||| |||||    
T  26656345 taaatcttg 26656353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 26762116 - 26762324
Alignment:
Q  31 gttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaata 130  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| | ||| ||||| ||||| ||||| ||||||||   |||||  ||||||||||    
T  26762116 gttttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaata 26762215  T
Q  131 acaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcctctttact 230  Q
    ||||| |||||||| || ||||| | ||||||||| | ||||||||||||||||| |||||||| |||||||||| |||||  |||||| || |||||||    
T  26762216 acaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtaccccactttact 26762315  T
Q  231 taattcttg 239  Q
    ||| |||||    
T  26762316 taaatcttg 26762324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 25579878 - 25580080
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataaca 133  Q
    ||||| ||||||||||  ||||| |||||| ||||||||||||| |||||||||||||||||  |||| ||||||||   | |||| || |||||||||     
T  25579878 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagtatcttactaagcatgaagagaggtttcaaaataacg 25579977  T
Q  134 agaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcc---tgggtactcctctttact 230  Q
    |||||||||||||||| |||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| ||||||   ||||||| || |||||||    
T  25579978 agaaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttact 25580077  T
Q  231 taa 233  Q
    |||    
T  25580078 taa 25580080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 26056085 - 26056264
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataaca 133  Q
    ||||| ||||||||||  ||||| |||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| | | || | ||||||||||||     
T  26056085 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaataacg 26056184  T
Q  134 agaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||||||||| |||| |||||||||| | ||||| ||  |||||||||||||||||||||| |||| |||||||    
T  26056185 agaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcct 26056264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 26076055 - 26076234
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataaca 133  Q
    ||||| ||||||||||  ||||| |||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| | | || | ||||||||||||     
T  26076055 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaataacg 26076154  T
Q  134 agaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||||||||| |||| |||||||||| | ||||| ||  |||||||||||||||||||||| |||| |||||||    
T  26076155 agaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcct 26076234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 283 - 442
Target Start/End: Complemental strand, 27427385 - 27427223
Alignment:
Q  283 aataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatat 381  Q
    ||||||||||||||||||||||  | ||||||||||| |||||  ||||||||||| | ||||||||||||| ||||||||||||| |||||||| ||||    
T  27427385 aataccatcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatat 27427286  T
Q  382 attatgaggacatggatgtga--ctgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||| ||||||||||||   ||||||||||||||||||| ||||||||| |||||||||    
T  27427285 attatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatg 27427223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 27338096 - 27337893
Alignment:
Q  31 gttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaata 130  Q
    |||||||||||||||||||| | |||||||||| || |||||||||| | ||||||||||||||| ||||| ||||||||   | | |  ||||||||||    
T  27338096 gttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaata 27337997  T
Q  131 acaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcctctttact 230  Q
    ||||| ||||||||||| ||||| |  |||||||| | ||||| ||| ||||||||||||| |||||| ||||||||||||  |||||| || |||||||    
T  27337996 acaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtcaagggtaccccactttact 27337897  T
Q  231 taat 234  Q
    ||||    
T  27337896 taat 27337893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 27398836 - 27398633
Alignment:
Q  31 gttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaata 130  Q
    |||||||||||||||||||| | |||||||||| || |||||||||| | ||||||||||||||| ||||| ||||||||   | | |  ||||||||||    
T  27398836 gttttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaata 27398737  T
Q  131 acaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcctctttact 230  Q
    ||||| ||||||||||| ||||| |  |||||||| | ||||| ||| ||||||||||||| |||||| ||||||||||||  |||||| || |||||||    
T  27398736 acaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtcaagggtaccccactttact 27398637  T
Q  231 taat 234  Q
    ||||    
T  27398636 taat 27398633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 40 - 233
Target Start/End: Original strand, 26143030 - 26143226
Alignment:
Q  40 gttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataacaagaaaa 139  Q
    ||||||||||  ||||| |||||| |||||||| |||| ||||||| ||||||||| ||||| ||||||||   | |||| || ||||||||| ||||||    
T  26143030 gttttctatgatgtggaacctactcacatacgaaatcagagtgggatttatggtgagcatcttactaagcatgaagagaggtttcaaaataacgagaaaa 26143129  T
Q  140 acatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcc---tgggtactcctctttacttaa 233  Q
    |||||||||| |||| |||||||||| ||||||| | | |||||||||||||||||||||| |||| ||||||   ||||||| || ||||||||||    
T  26143130 acatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaa 26143226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 27604444 - 27604315
Alignment:
Q  315 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatga--ggacatggatgtgactgtgatgtt 412  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||  | |||||||||||| | |||||||    
T  27604444 tttttatttacgtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattctgagtgtacatggatgtgattatgatgtt 27604345  T
Q  413 gttacatactgacttatattcttggacatg 442  Q
    |||||||||| |||||| || |||||||||    
T  27604344 gttacatactaacttatcttattggacatg 27604315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 279 - 442
Target Start/End: Original strand, 26802850 - 26803017
Alignment:
Q  279 caataataccatcttaaagcctaaattggaaacaccttt-ttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatg 377  Q
    |||||||  ||||||||||  ||||| ||||| |||||| |||| ||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||     
T  26802850 caataatctcatcttaaaggttaaatgggaaatacctttcttatatacgtttttaaacaagtattagttatttatatgttgaaatagttagaaatgtata 26802949  T
Q  378 atatattatgaggacatggatgtgactgtgatgttgt---tacatactgacttatattcttggacatg 442  Q
    |||||||||||| |||||||||||| |||||||||||   |||||||| |||||| || |||||||||    
T  26802950 atatattatgagtacatggatgtgattgtgatgttgttagtacatactaacttatcttgttggacatg 26803017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 28781516 - 28781659
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatgatatatta 385  Q
    ||||||||||||||||| |||||||| |||| ||||||| ||||||||||| |||| | |||||| || ||||||||||||||||||||||  ||||||     
T  28781516 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaattatttaattatttttatgtcaaaatagttagaaatgtatactatattc 28781615  T
Q  386 tgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  28781616 tgagtacatggatgtgattgtgatgttgttacatactaacttat 28781659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 25538699 - 25538907
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataaca 133  Q
    ||||| ||||||||||  ||||| |||||| |  |||||||||| ||||||||||||||||| ||| | ||||||||   | |||| || ||||||||      
T  25538699 ttgcccgttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggtgagcattttactaagcatgaagagaggtttcaaaataatg 25538798  T
Q  134 agaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcc---tgggtactcctctttact 230  Q
    |||||||||||||||| |||| |||||||||| ||||||| | | |||||||||||||||||||||| |||| ||||||   ||||||| || |||||||    
T  25538799 agaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttact 25538898  T
Q  231 taattcttg 239  Q
    ||| |||||    
T  25538899 taaatcttg 25538907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 28786655 - 28786796
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatgatatatta 385  Q
    |||||||||||||||   ||||||||||||| ||||||| |||||||||||||||| | |||||| || ||||||||||||||||||||||  ||||||     
T  28786655 catcttaaagcctaag--ggaaacaccttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattc 28786752  T
Q  386 tgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  28786753 tgagtacatggatgtgattgtgatgttgttacatactaacttat 28786796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 28792776 - 28792917
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatgatatatta 385  Q
    |||||||||||||||   ||||||||||||| ||||||| |||||||||||||||| | |||||| || ||||||||||||||||||||||  ||||||     
T  28792776 catcttaaagcctaag--ggaaacaccttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattc 28792873  T
Q  386 tgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  28792874 tgagtacatggatgtgattgtgatgttgttacatactaacttat 28792917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 26823982 - 26824184
Alignment:
Q  17 aaaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaa 116  Q
    ||||||| || || |||||||||||||||||||| |||||||||  |||||||||||||||  |||||||||||| |  |||||||||||||||   |||    
T  26823982 aaaaggggcgcctcgttttgcctgttttctatggtgtggatcctggtgacatacgacatcagcgtgggagttatgctatacatctcactaagcatgaaaa 26824081  T
Q  117 gagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctggg 216  Q
    ||| |||  |||||||||| |||||||||||   |||| ||||||||||   |||||||   |||||||| ||||||| ||||  |||||||||| ||||    
T  26824082 gaggttcggaaataacaaggaaaacatggagaaattgcttcaatggaagaaggctctgaaacaagctgctgacttgtctggctttcattttagtcttggg 26824181  T
Q  217 tac 219  Q
    |||    
T  26824182 tac 26824184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 28786517 - 28786638
Alignment:
Q  114 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||| || |||||| | ||| | ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  28786517 aaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T
Q  214 gggtactcctctttacttaatt 235  Q
    ||||||  || |||||||||||    
T  28786617 gggtacgactatttacttaatt 28786638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 28781378 - 28781499
Alignment:
Q  114 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||| || |||||| | ||| | ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  28781378 aaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T
Q  214 gggtactcctctttacttaatt 235  Q
    ||||||  |  |||||||||||    
T  28781478 gggtacgacaatttacttaatt 28781499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 28792638 - 28792743
Alignment:
Q  114 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||| || |||||| | ||| | ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||    
T  28792638 aaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T
Q  214 gggtac 219  Q
    ||||||    
T  28792738 gggtac 28792743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 25481907 - 25482080
Alignment:
Q  40 gttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagcacagaaagagtttccaaaataacaagaaaa 139  Q
    ||||||||||| ||||||||||||||  | |||| ||| |   | |||||||||||| |||| ||||||||   | || | |||||||||||| ||||||    
T  25481907 gttttctatggtgtggatcctactgatgttcgacgtcatacatgtagttatggtgaatatctgactaagcatgaagaggggttccaaaataacgagaaaa 25482006  T
Q  140 acatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||| |||| |||||||||| | ||||| ||  |||||||||| ||||||||||| |||| |||||||    
T  25482007 acatggagcgattgcgtcaatggaagatggctcttactcaagctgctaatttgtccggctatcattatagtcct 25482080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 442
Target Start/End: Complemental strand, 27592799 - 27592632
Alignment:
Q  279 caataataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgt 374  Q
    |||||||  ||||||||||  ||||  ||||| |||||||| || |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||||    
T  27592799 caataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgt 27592700  T
Q  375 atgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    || ||| ||| | || |||||||||||| ||||||||||||| | ||| |||||| || ||| |||||    
T  27592699 ataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatg 27592632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 442
Target Start/End: Original strand, 27679354 - 27679521
Alignment:
Q  279 caataataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgt 374  Q
    |||||||  ||||||||||  ||||  ||||| |||||||| || |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||||    
T  27679354 caataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgt 27679453  T
Q  375 atgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    || ||| ||| | || |||||||||||| ||||||||||||| | ||| |||||| || ||| |||||    
T  27679454 ataatacattcttagtacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatg 27679521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 26623119 - 26623193
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatgg 92  Q
    |||||||||||| |||||||| || ||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  26623119 aaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26623193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 26729097 - 26729171
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatgg 92  Q
    |||||||||||| |||||||| || ||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  26729097 aaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 27698301 - 27698212
Alignment:
Q  338 gtattagttatttataagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttgttacatactgactt 427  Q
    |||||||||||||||| ||| |||||||||||||| ||| ||||||| |||| |||| ||||||| |||||||||||| |||||| ||||    
T  27698301 gtattagttatttatatgtcgaaatagttagaaatttataatatattctgagtacatagatgtgattgtgatgttgtttcatactaactt 27698212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 26861755 - 26861957
Alignment:
Q  17 aaaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaa-catctcactaagcacagaa 115  Q
    ||||||||||  | ||||||||||||||||||||| ||||||||||| |  | |||||||| || || | |||||||||| ||| |  |||||||   ||    
T  26861755 aaaagggtcgcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcat-tggctaagcatgaaa 26861853  T
Q  116 agagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgg 215  Q
    | || || |||||| | | | | ||||||||| |||||||   ||||||  | ||||||| | |||||||||||||||| ||||||||||||||||||||    
T  26861854 aaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcctgg 26861953  T
Q  216 gtac 219  Q
    ||||    
T  26861954 gtac 26861957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 27214669 - 27214758
Alignment:
Q  124 caaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||||| |||||||||||||||||||  |||||||| ||||||| | | ||||||||||||| || ||||| |||| |||||||    
T  27214669 caaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattatagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 27234559 - 27234470
Alignment:
Q  124 caaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||||| |||||||||||||||||||  |||||||| ||||||| | | ||||||||||||| || ||||| |||| |||||||    
T  27234559 caaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcattatagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 27706145 - 27706015
Alignment:
Q  315 tttttatttacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgt 411  Q
    ||||||| |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||| || ||| ||| | || |||||||||||| || |||||    
T  27706145 tttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgaataatacattcttagtacatggatgtgattgggatgt 27706046  T
Q  412 tgttacatactgacttatattcttggacatg 442  Q
    ||||| | ||| |||||| || ||| |||||    
T  27706045 tgttagacactaacttatcttattgcacatg 27706015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 27718423 - 27718228
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaa-catctcactaagcacagaaa 116  Q
    ||||||||| || ||||||||||||||||  |||||||| |||||| || | |||||||| |  || |||||||||||| ||| |  || ||||   |||    
T  27718423 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcat-tggctgagcatgaaaa 27718325  T
Q  117 gagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    ||| || |||||| | ||||| ||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||||||||||||||||  |||||||    
T  27718324 gaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 27718228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 27677331 - 27677231
Alignment:
Q  339 tattagttatttataagtcaaaatagttagaaatgtatgatatattatgaggacatggatgtgactgtgatgttgttacatactgacttatattcttgga 438  Q
    ||||||||||||||| ||| |||||||||||||||||| ||| |||   || |||||||||||| ||||||||||||| | ||| |||||| || ||| |    
T  27677331 tattagttatttatatgtcgaaatagttagaaatgtataatacatt---agtacatggatgtgattgtgatgttgttagacactaacttatcttattgca 27677235  T
Q  439 catg 442  Q
    ||||    
T  27677234 catg 27677231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 26646892 - 26646990
Alignment:
Q  288 catcttaaagcctaaattggaaacacct--ttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 384  Q
    ||||||||||| ||||| |||||||| |  ||||||| |  ||||||||||||||| | ||||||||| ||||||| |||||||| ||||| |||||||    
T  26646892 catcttaaagcttaaataggaaacacatatttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26646990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 384
Target Start/End: Original strand, 26752860 - 26752958
Alignment:
Q  288 catcttaaagcctaaattggaaacacct--ttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 384  Q
    ||||||||||| ||||| |||||||| |  ||||||| |  ||||||||||||||| | ||||||||| ||||||| |||||||| ||||| |||||||    
T  26752860 catcttaaagcttaaataggaaacacatatttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatatt 26752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 26949902 - 26950005
Alignment:
Q  116 agagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgg 215  Q
    |||| |||||||| | ||| |||||||||||||||||||   |||||||| ||||||||| ||||| |||| |||| || ||||||||||| | || |||    
T  26949902 agaggttccaaaagagcaaaaaaaacatggagcggttgctgaaatggaagatagctctgaacaaagttgctgacttatctggctaccatttcaatcttgg 26950001  T
Q  216 gtac 219  Q
    ||||    
T  26950002 gtac 26950005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 26617868 - 26617953
Alignment:
Q  121 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattt 206  Q
    ||||||||||||||| |||||||||||||||||||  |||||||| ||||||| | | |||||  |||||| || ||||| |||||    
T  26617868 ttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcattt 26617953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 26723796 - 26723881
Alignment:
Q  121 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattt 206  Q
    ||||||||||||||| |||||||||||||||||||  |||||||| ||||||| | | |||||  |||||| || ||||| |||||    
T  26723796 ttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcattt 26723881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 26049004 - 26049080
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagca 110  Q
    ||||| ||||| ||||  ||||| |||||| ||||||||||||| ||||| ||||||||||| ||||| ||||||||    
T  26049004 ttgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagca 26049080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 26070173 - 26070249
Alignment:
Q  34 ttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaacatctcactaagca 110  Q
    ||||| ||||| ||||  ||||| |||||| ||||||||||||| ||||| ||||||||||| ||||| ||||||||    
T  26070173 ttgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagca 26070249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 26884473 - 26884523
Alignment:
Q  183 tgctaacttgtccggctaccattttagtcctgggtactcctctttacttaa 233  Q
    ||||||||||||||||||||||||||||| ||||||  || ||||||||||    
T  26884473 tgctaacttgtccggctaccattttagtcttgggtatcccactttacttaa 26884523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 26811755 - 26811807
Alignment:
Q  121 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctct 173  Q
    ||||||||||||||| |||||||||| ||||||||  |||||||| |||||||    
T  26811755 ttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctct 26811807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 26959415 - 26959519
Alignment:
Q  124 caaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcct 223  Q
    ||||||| |||| ||||||||||||||||||   ||||||||  |||||| | | ||||||||||||| || ||| ||||||| | || ||||||| | |    
T  26959415 caaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccctt 26959514  T
Q  224 cttta 228  Q
    |||||    
T  26959515 cttta 26959519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 28139697 - 28139745
Alignment:
Q  31 gttttgcctgttttctatggcgtggatcctactgacatacgacatcaaa 79  Q
    |||||||||||||||||||| ||||||||| || |||| ||||||||||    
T  28139697 gttttgcctgttttctatggtgtggatccttctcacattcgacatcaaa 28139745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 26824240 - 26824294
Alignment:
Q  307 gaaacacctttttatttacatttttaaacaagtattagttatttataagtcaaaa 361  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||||| ||| ||||    
T  26824240 gaaacacatttttttttatattcttaaacaagtattagttatttattagtaaaaa 26824294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 27724889 - 27724811
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaa 96  Q
    ||||||||| || ||||||||||||||||  |||||||| |||||| || | |||||||| |  || ||||||||||||    
T  27724889 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaa 27724811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 28297654 - 28297556
Alignment:
Q  121 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtac 219  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||||   ||||| ||  || |||||||||| || ||| ||||||| | |||| |||||    
T  28297654 ttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtac 28297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 28514419 - 28514517
Alignment:
Q  121 ttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtac 219  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||||   ||||| ||  || |||||||||| || ||| ||||||| | |||| |||||    
T  28514419 ttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatttcaatcctaggtac 28514517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 29826171 - 29826245
Alignment:
Q  19 aagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggt 93  Q
    ||||||||||| ||||||||| |||||||||  ||||||||| || |  | |||||||| | |||||||||||||    
T  29826171 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 29826245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 25483513 - 25483570
Alignment:
Q  327 tttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 384  Q
    |||| |||||||| | ||||||||||| ||||||| |||||||| || ||||||||||    
T  25483513 ttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcatgatatatt 25483570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 25506961 - 25506852
Alignment:
Q  85 agttatggtgaacatctcactaagcacagaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctg 184  Q
    |||||||||||| |||| ||||||||   | |||  || |||||||| ||||||||||||||| | | ||||||||||||  ||||||| ||  || |||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggagagatcgcatcaatggaaaatagctctaacacaatctg 25506862  T
Q  185 ctaacttgtc 194  Q
    ||||| ||||    
T  25506861 ctaacctgtc 25506852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 31284714 - 31284782
Alignment:
Q  315 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatatt 384  Q
    |||||||||| || ||||||||| ||||||||| || || ||||||| | |||||| |||||||||||||    
T  31284714 tttttatttatatatttaaacaaatattagtta-ttgtatgtcaaaacaattagaattgtatgatatatt 31284782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 228
Target Start/End: Original strand, 26975301 - 26975405
Alignment:
Q  124 caaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtactcct 223  Q
    |||||||| ||  ||||| |||||||||||| | ||||||||  |||||| | | ||||||||||||| || ||| ||||||| | || ||||||| | |    
T  26975301 caaaataaaaatgaaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccctt 26975400  T
Q  224 cttta 228  Q
    |||||    
T  26975401 cttta 26975405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 283 - 442
Target Start/End: Original strand, 59978 - 60140
Alignment:
Q  283 aataccatcttaaagcctaaattggaaacaccttttt-atttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatat 381  Q
    ||||||||||||||||||||||  | ||||||||||| |||||  ||||||||||| | ||||||||||||| ||||||||||||| |||||||| ||||    
T  59978 aataccatcttaaagcctaaatgtgtaacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatat 60077  T
Q  382 attatgaggacatggatgtga--ctgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||| ||||||||||||   ||||||||||||||||||| ||||||||| |||||||||    
T  60078 attatgagtacatggatgtgattgtgtgatgttgttacatactaacttatattattggacatg 60140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 4715 - 4498
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaa-catctcactaagcacagaaa 116  Q
    ||||||||| || ||||||||||||||||  |||||||| |||||| || | |||||||  |  || |||||||||||| ||| |  || ||||   |||    
T  4715 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcat-tggctgagcatgaaaa 4617  T
Q  117 gagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctggg 216  Q
    ||| || |||||| | ||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  4616 gaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcatggg 4517  T
Q  217 tactcctctttacttaatt 235  Q
    ||| ||| |||||||||||    
T  4516 tacgcctatttacttaatt 4498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 288 - 429
Target Start/End: Complemental strand, 13442 - 13299
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatgatatatta 385  Q
    ||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||| | ||| || || ||||||||||||||||||||||  ||||||     
T  13442 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattc 13343  T
Q  386 tgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  13342 tgagtacatggatgtgattgtgatgttgttacatactaacttat 13299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 288 - 429
Target Start/End: Complemental strand, 4481 - 4336
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatg--atatat 383  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| | ||| || || |||| |||||||||||||||||   ||||||    
T  4481 catcttaaagcctaaatgggaaacaccttttatatttacgtttttaaacaagtatttaattacttttatgtcacaatagttagaaatgtataccatatat 4382  T
Q  384 tatgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||    
T  4381 tatgagtacatggatgtgattgtgatgttgttacatactaacttat 4336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 13580 - 13459
Alignment:
Q  114 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||| || |||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |    
T  13580 aaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcat 13481  T
Q  214 gggtactcctctttacttaatt 235  Q
    ||||||  || |||||||||||    
T  13480 gggtacgactatttacttaatt 13459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 7902 - 8045
Alignment:
Q  288 catcttaaagcctaaattggaaacacctttt-tatttacatttttaaacaagtatt-agttatttataagtcaaaatagttagaaatgtatgatatatta 385  Q
    ||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||| | ||| || || ||||||||||||||||||||||  ||||||     
T  7902 catcttaaagcctaaatgggaaacactttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattc 8001  T
Q  386 tgaggacatggatgtgactgtgatgttgttacatactgacttat 429  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||    
T  8002 tgagtacatggatgtgattgtgatgttgttacatactaacttat 8045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 7764 - 7885
Alignment:
Q  114 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||| || |||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |    
T  7764 aaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcat 7863  T
Q  214 gggtactcctctttacttaatt 235  Q
    ||||||  || |||||||||||    
T  7864 gggtacgactatttacttaatt 7885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 3346 - 3269
Alignment:
Q  136 aaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    |||||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||||||||||||||||  |||||||    
T  3346 aaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcct 3269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 14400 - 14205
Alignment:
Q  18 aaagggtcgtcttgttttgcctgttttctatggcgtggatcctactgacatacgacatcaaagtgggagttatggtgaa-catctcactaagcacagaaa 116  Q
    ||||||||| || ||||||||||||||||  |||||||| |||||| || | |||||||| |  || |||||||||||| ||| |  || ||||   |||    
T  14400 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcat-tggctgagcatgaaaa 14302  T
Q  117 gagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcct 213  Q
    ||| || |||||| |   ||||||||||||| |||||||   ||||||    ||||||| | | ||||||||||||||||||||||||  |||||||    
T  14301 gaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcct 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 14135 - 14084
Alignment:
Q  391 acatggatgtgactgtgatgttgttacatactgacttatattcttggacatg 442  Q
    |||||||||||| ||||||||||| ||||||| |||||| || |||||||||    
T  14135 acatggatgtgattgtgatgttgtcacatactaacttatcttattggacatg 14084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3279967 - 3280047
Alignment:
Q  139 aacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggtac 219  Q
    |||||| || |||||||| |||||||| | ||||| | | |||| ||||||||||||||| ||||||||| |||| |||||    
T  3279967 aacatgaagaggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccattttaatcctaggtac 3280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 17993627 - 17993518
Alignment:
Q  119 gtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccaaagctgctaacttgtccggctaccattttagtcctgggta 218  Q
    |||| ||||||| |||| |||||||||||||||||    ||||||||  |||||| | | ||||||||||||| || ||| ||||||| | ||  |||||    
T  17993627 gttttcaaaatagcaaggaaaacatggagcggttgttgaaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcaagggta 17993528  T
Q  219 ctcctcttta 228  Q
    ||| ||||||    
T  17993527 ctcatcttta 17993518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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