View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1892_high_4 (Length: 279)
Name: NF1892_high_4
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1892_high_4 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 6513135 - 6513386
Alignment:
| Q |
11 |
cacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacat |
110 |
Q |
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| T |
6513135 |
cacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacat |
6513234 |
T |
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| Q |
111 |
tgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgagnnnnnnnnnnnnnnnnnnnnnnnncaaggagaatgagcttt |
210 |
Q |
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| T |
6513235 |
tgtttaagaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgagttttattttatttattttttattacaaggagaatgagcttt |
6513334 |
T |
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| Q |
211 |
cattgaaaaagaatttggccggctatagattcagctattgctagcttttaaa |
262 |
Q |
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| T |
6513335 |
cattgaaaaagaatttggccggctatagattcgactattgctagcttttaaa |
6513386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 6521501 - 6521343
Alignment:
| Q |
11 |
cacagaagtattgcaatttgttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacat |
110 |
Q |
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| T |
6521501 |
cacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacat |
6521402 |
T |
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| Q |
111 |
tgtataacaaataacagacaataattatggatgtttgaagcattaaaatgtggaatgag |
169 |
Q |
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| T |
6521401 |
tgtataacaaataacaaacaataattatggatgtttcaagctttaaaatgtggaatgag |
6521343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 6507272 - 6507392
Alignment:
| Q |
49 |
gctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttga |
148 |
Q |
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| T |
6507272 |
gctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttca |
6507371 |
T |
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| Q |
149 |
agcattaaaatgtggaatgag |
169 |
Q |
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| T |
6507372 |
agctttaaaatgtggaatgag |
6507392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 6517572 - 6517681
Alignment:
| Q |
49 |
gctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttga |
148 |
Q |
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| T |
6517572 |
gctgtggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacattgtttaacaaataacaaacaataattattgatgtttca |
6517671 |
T |
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| Q |
149 |
agcattaaaa |
158 |
Q |
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| T |
6517672 |
agctttaaaa |
6517681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 6507424 - 6507467
Alignment:
| Q |
199 |
agaatgagctttcattgaaaaagaatttggccggctatagattc |
242 |
Q |
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| T |
6507424 |
agaatgagctttcattgagaaagaatttggccggctatagattc |
6507467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 6521335 - 6521306
Alignment:
| Q |
212 |
attgaaaaagaatttggccggctatagatt |
241 |
Q |
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| T |
6521335 |
attgaaaaagaatttggccggctatagatt |
6521306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 1297 - 1417
Alignment:
| Q |
49 |
gctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttga |
148 |
Q |
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|||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |
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| T |
1297 |
gctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttca |
1396 |
T |
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| Q |
149 |
agcattaaaatgtggaatgag |
169 |
Q |
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| T |
1397 |
agctttaaaatgtggaatgag |
1417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 8951 - 9071
Alignment:
| Q |
49 |
gctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacattgtataacaaataacagacaataattatggatgtttga |
148 |
Q |
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|||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |
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| T |
8951 |
gctgtgctgatttgagatgtgaaaatgaatgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttca |
9050 |
T |
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| Q |
149 |
agcattaaaatgtggaatgag |
169 |
Q |
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||| ||||||||||||||||| |
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| T |
9051 |
agctttaaaatgtggaatgag |
9071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 1449 - 1492
Alignment:
| Q |
199 |
agaatgagctttcattgaaaaagaatttggccggctatagattc |
242 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1449 |
agaatgagctttcattgagaaagaatttggccggctatagattc |
1492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 9105 - 9148
Alignment:
| Q |
199 |
agaatgagctttcattgaaaaagaatttggccggctatagattc |
242 |
Q |
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| T |
9105 |
agaatgagctttcattgagaaagaatttggccggctatagattc |
9148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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