View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1892_low_3 (Length: 418)
Name: NF1892_low_3
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1892_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 16087442 - 16087058
Alignment:
| Q |
17 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
116 |
Q |
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| T |
16087442 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
16087343 |
T |
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| Q |
117 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatagccgagttgtatgattcct |
216 |
Q |
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| T |
16087342 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatggccgagttgtatgattcct |
16087243 |
T |
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| Q |
217 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
316 |
Q |
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| T |
16087242 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
16087143 |
T |
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| Q |
317 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttagaaa |
401 |
Q |
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| T |
16087142 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaattttggttgttagaaa |
16087058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 16080975 - 16080874
Alignment:
| Q |
288 |
aaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaatt |
387 |
Q |
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| T |
16080975 |
aaagtttatatgtacctttatgaatggtgttgctgatctttgtaatttttcaacaattgttcctgaagtattgaaggtcataagagagacctcactaatt |
16080876 |
T |
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| Q |
388 |
tt |
389 |
Q |
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|| |
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| T |
16080875 |
tt |
16080874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 16439818 - 16439763
Alignment:
| Q |
334 |
ttctcaacaattgttactaaagaattgatggacataagagagacctcactaatttt |
389 |
Q |
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| T |
16439818 |
ttctcaacaattggtactaaagtattgatggacataagagagacctcactaatttt |
16439763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 16438745 - 16438644
Alignment:
| Q |
285 |
attaaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcacta |
384 |
Q |
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| T |
16438745 |
attaaagtttatatgtaccttcatgtatggttttgctgacctttgtaacctttcgccaattgttaccaaagtattgatggacataa---agacctcacta |
16438649 |
T |
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| Q |
385 |
atttt |
389 |
Q |
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||||| |
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| T |
16438648 |
atttt |
16438644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 16086376 - 16086286
Alignment:
| Q |
299 |
gtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagacctcactaatttt |
389 |
Q |
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||||||| ||||||||| ||||||| ||||| || || | || |||||| ||||||| ||||||||| | | ||||||||||||| ||||| |
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| T |
16086376 |
gtaccttcatgaatggtattgctgaactttgaaacttatgaaaaattgtgactaaagtattgatggatacacgagagacctcactgatttt |
16086286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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