View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1892_low_5 (Length: 277)

Name: NF1892_low_5
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1892_low_5
NF1892_low_5
[»] scaffold0071 (2 HSPs)
scaffold0071 (182-262)||(2194-2274)
scaffold0071 (72-120)||(2102-2150)
[»] chr3 (3 HSPs)
chr3 (182-262)||(15459917-15459997)
chr3 (72-120)||(15460042-15460090)
chr3 (193-230)||(32567802-32567839)
[»] chr4 (2 HSPs)
chr4 (192-252)||(12846438-12846495)
chr4 (192-230)||(44123096-44123134)
[»] chr8 (1 HSPs)
chr8 (192-252)||(28224616-28224673)
[»] chr1 (1 HSPs)
chr1 (200-252)||(5666441-5666490)
[»] chr7 (1 HSPs)
chr7 (193-230)||(3484396-3484433)
[»] chr2 (1 HSPs)
chr2 (193-226)||(8873072-8873105)


Alignment Details
Target: scaffold0071 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 2194 - 2274
Alignment:
Q  182 aaggaagattctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccctgccaatactt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2194 aaggaagattctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccctgccaatactt 2274  T

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Target: scaffold0071; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 2102 - 2150
Alignment:
Q  72 caactagtgggggacaacatcgacaagtaagaatattatattttttctt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2102 caactagtgggggacaacatcgacaagtaagaatattatattttttctt 2150  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 15459997 - 15459917
Alignment:
Q  182 aaggaagattctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccctgccaatactt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15459997 aaggaagattctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccctgccaatactt 15459917  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 15460090 - 15460042
Alignment:
Q  72 caactagtgggggacaacatcgacaagtaagaatattatattttttctt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15460090 caactagtgggggacaacatcgacaagtaagaatattatattttttctt 15460042  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 32567802 - 32567839
Alignment:
Q  193 tatggagatttctttaaacatttcaattgaatttgaaa 230  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  32567802 tatggaaatttctttgaacatttcaattgaatttgaaa 32567839  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 12846438 - 12846495
Alignment:
Q  192 ctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccct 252  Q
    ||||||| |||||||| |||||||||||||||||||||| |   |||||||||||||||||    
T  12846438 ctatggaaatttctttgaacatttcaattgaatttgaaatt---tattgtcaaattaccct 12846495  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 44123134 - 44123096
Alignment:
Q  192 ctatggagatttctttaaacatttcaattgaatttgaaa 230  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  44123134 ctatggaaatttctttaaacatttcaattgaatttgaaa 44123096  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 28224616 - 28224673
Alignment:
Q  192 ctatggagatttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccct 252  Q
    |||||||  ||||||| ||||||||||||||||||||||   | |||||||||||||||||    
T  28224616 ctatggaactttctttgaacatttcaattgaatttgaaa---cttattgtcaaattaccct 28224673  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 5666441 - 5666490
Alignment:
Q  200 atttctttaaacatttcaattgaatttgaaagttcatattgtcaaattaccct 252  Q
    |||||||| ||||||||||||||||||||||   | |||||||||||||||||    
T  5666441 atttctttgaacatttcaattgaatttgaaa---cttattgtcaaattaccct 5666490  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 3484396 - 3484433
Alignment:
Q  193 tatggagatttctttaaacatttcaattgaatttgaaa 230  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  3484396 tatggaaatttctttgaacatttcaattgaatttgaaa 3484433  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 8873105 - 8873072
Alignment:
Q  193 tatggagatttctttaaacatttcaattgaattt 226  Q
    |||||| |||||||||||||||||||||||||||    
T  8873105 tatggacatttctttaaacatttcaattgaattt 8873072  T

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