View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1892_low_9 (Length: 228)
Name: NF1892_low_9
Description: NF1892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1892_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 42313964 - 42313761
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagctt |
109 |
Q |
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| T |
42313964 |
acatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaacatgagctt |
42313865 |
T |
|
| Q |
110 |
ttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
209 |
Q |
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| T |
42313864 |
ttggagaaccaccttttgcagtgccattaccatttccataaacacttactccttgaacgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
42313765 |
T |
|
| Q |
210 |
tatt |
213 |
Q |
| |
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|||| |
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|
| T |
42313764 |
tatt |
42313761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 23040745 - 23040693
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
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| T |
23040745 |
acatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatc |
23040693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42734781 - 42734729
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
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| T |
42734781 |
acatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42734729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 42717111 - 42717156
Alignment:
| Q |
17 |
caccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
62 |
Q |
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| T |
42717111 |
caccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42717156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 42762713 - 42762750
Alignment:
| Q |
10 |
acatcatcaccgtcacttatggcagcttcaaaaccagc |
47 |
Q |
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| T |
42762713 |
acatcaacaccatcacttatggcagcttcaaaaccagc |
42762750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 31108828 - 31108871
Alignment:
| Q |
166 |
acgaaattaccaccagctgttgatagagtgtgagaaccatggcc |
209 |
Q |
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| T |
31108828 |
acgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 24266846 - 24266787
Alignment:
| Q |
78 |
ccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
137 |
Q |
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||||||||||||||||||||||||||| | | |||| || |||||||| ||||| ||||| |
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| T |
24266846 |
ccaacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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