View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18930_low_1 (Length: 656)
Name: NF18930_low_1
Description: NF18930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18930_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 3527598 - 3526963
Alignment:
| Q |
19 |
tcgttgtctcattaattataacaaaatgaatagtggcaaaatgtgtacacgggtgatgctgatttgggtgttaatggtagtaattagcatgagtgtaatc |
118 |
Q |
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| T |
3527598 |
tcgttgtctcattaattataacaaaatgaataatggcaaaatgtgtacacgggtgatgctgatttgggtgttaatggtagtaattagcatgagtgtaatt |
3527499 |
T |
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| Q |
119 |
agcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacgttaactctacacaaccaccagacatttgctgca |
218 |
Q |
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| T |
3527498 |
agcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacattaactctacacaaccaccagacatttgctgca |
3527399 |
T |
|
| Q |
219 |
atccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgcagcttatggcttatttgaagcttttggtttgaaaattactcaggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527398 |
atccaattaaagatctatatgcaacccacaaaacatgtttctgtcaacttatcgcagcttatggcttatttgaagcttttggtttgaaaattactcaggt |
3527299 |
T |
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| Q |
319 |
tttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggtatgtgaaatgaaaacatatttaatacttcttccgtcctaaatcga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527298 |
tttccaagttatatacttatgtggtatcaacttcaataccagctcctgcataggtatgtgaaatgaaaacatatttaatacttcttccgtcctaaatcga |
3527199 |
T |
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| Q |
419 |
ctgacccattgaagaagnnnnnnnntttgatttttagagg-atattacttttttattttccaattctaccata----taagtacactactttcatcaatt |
513 |
Q |
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| T |
3527198 |
ctgacccattgaagaa--aaaaaaaattgatttttagaggaatattacttttttattttccaattctaccatataattaagtacactactttcatcaatt |
3527101 |
T |
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| Q |
514 |
caatttataataataatgagattacatcaatccatgcatttatatcctgatatttcgtaattggaaattttcagcttcttctccaactcttcccctgtcg |
613 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527100 |
caatttataataataatgagattacatcaatacatgcatttatatcctgatatttccttattggaaattttcagcttcttctccaactcttcccctgtcg |
3527001 |
T |
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| Q |
614 |
tcattgcagcccccaggtaaaatcctcttcatctcact |
651 |
Q |
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| T |
3527000 |
tcattgcagcccccaggtaaaatcctcttcatttcact |
3526963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 3537114 - 3536979
Alignment:
| Q |
96 |
tagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacgttaactctac |
195 |
Q |
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||||||||| ||| | |||||| ||| |||||||||||||| |||||||||||||||||| | | | | || ||||||| |||||| | || || || |
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| T |
3537114 |
tagtaattaacataaatgtaattagcatagtagatgcacaaatgcttccaccttgtgctggtgataagatgttgccatgcacagactacctcaattccac |
3537015 |
T |
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| Q |
196 |
acaaccaccagacatttgctgcaatccaattaaaga |
231 |
Q |
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| T |
3537014 |
tcatccaccagacatttgctgcaatccaattaaaga |
3536979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 3531929 - 3531880
Alignment:
| Q |
98 |
gtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccacc |
147 |
Q |
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||||||||||||||||| || ||| || ||||||||||||| |||||||| |
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| T |
3531929 |
gtaattagcatgagtgtgattagcatattagatgcacaagttcttccacc |
3531880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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